RNA id: AMCG00012105


Basic Information

Item Value
RNA id AMCG00012105
length 180
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00012105
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10816588 ~ 10819586 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCTTCTCTCCTCCACAGACCCGCATTGCCACTACGGCCGCCTGCAGCACTTCTGCTTCCTCTTGCGGGGCGGCTTGGTGTTGATGTTGACCAGCTCTCCCTGCCGCTCGTTCAGCCGGGCCTGCGAAGCTTTCTTGGCGCGCAGCACCATGCGTGTGAAGGCCAAGAACATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168833 lncRNA upstream 132491 10633508 ~ 10684097 (+) True AMCG00012088
TU168807 lncRNA upstream 217747 10598539 ~ 10598841 (+) True G134498
TU168804 lncRNA upstream 221182 10594849 ~ 10595406 (+) True G134495
TU168654 lncRNA upstream 546534 10269680 ~ 10270054 (+) True G134378
TU168606 lncRNA upstream 615618 10199151 ~ 10200970 (+) True G134339
TU168877 lncRNA downstream 30272 10849858 ~ 10853291 (+) True G134556
TU168958 lncRNA downstream 114129 10933715 ~ 10935107 (+) False G134613
TU168978 lncRNA downstream 147690 10967276 ~ 10971088 (+) False G134615
TU168979 lncRNA downstream 147690 10967276 ~ 10982794 (+) True G134615
TU168992 lncRNA downstream 229479 11049065 ~ 11055684 (+) False AMCG00012112
AMCG00012099 mRNA upstream 260 10812697 ~ 10816328 (+) True AMCG00012099
AMCG00012098 mRNA upstream 12359 10803368 ~ 10804229 (+) True AMCG00012098
AMCG00012097 mRNA upstream 20113 10793886 ~ 10796475 (+) True AMCG00012097
AMCG00012096 mRNA upstream 39506 10768044 ~ 10777082 (+) True AMCG00012096
AMCG00012089 mRNA upstream 147802 10659902 ~ 10668786 (+) True AMCG00012089
AMCG00012110 mRNA downstream 60358 10879944 ~ 10890247 (+) True AMCG00012110
AMCG00012107 mRNA downstream 85466 10905052 ~ 10909045 (+) True AMCG00012107
AMCG00012106 mRNA downstream 93824 10913410 ~ 10917138 (+) True AMCG00012106
AMCG00012108 mRNA downstream 161092 10980678 ~ 10980866 (+) True AMCG00012108
AMCG00012112 mRNA downstream 235853 11055439 ~ 11061030 (+) True AMCG00012112
TU168610 other upstream 498770 10303273 ~ 10317818 (+) True G134343
TU168648 other upstream 508749 10252810 ~ 10307839 (+) True G134373
TU168604 other upstream 557364 10223004 ~ 10259224 (+) True G134337
TU168639 other upstream 676131 10139954 ~ 10140457 (+) True G134366
TU168638 other upstream 681996 10134027 ~ 10134592 (+) True G134365
TU168966 other downstream 107020 10926606 ~ 10930453 (+) True G134613
TU169090 other downstream 422643 11242229 ~ 11290522 (+) False G134697
TU169086 other downstream 427096 11246682 ~ 11290522 (+) True G134697
TU169087 other downstream 465164 11284750 ~ 11293899 (+) False G134697
TU169151 other downstream 616793 11436379 ~ 11446163 (+) True G134743

Expression Profile