RNA id: AMCG00012106


Basic Information

Item Value
RNA id AMCG00012106
length 1357
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00012106
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10913410 ~ 10917138 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACCTATATAAAGCATGTTGTCTTCGATGGAGTCCAGTAGGGTGAGGAAGAGTCAATCCTCTGTGACCAGTGAGCTGCCGTAGTTGTTGAGAGTCAGTGCTCTGTGTCCAGTGAGAATCCAGGAGGGTCAAGATGCTtttcctgcagctgctgttctCTGTCCTGCTGCTGAACACCTGCGAAGtgtccAGCAGTCCTCTCTTTGGGACTTTCGTAGATGGGCCGAATCTTGATAGTCAGTTCCATTGGAGGTGGCTTGTGGGAGTGGACGTCATCACAGGGGGCAGTGGGACGATCTACCCAGGCATCCTGGTTGGGGCAAAGTGGGTTTTGACAGCCCAACACATCTTCAATGGGGCTAGCATCAGCCGCAGCAGAGTCTGGGGGGGGGACAATGATCTGAGGCAAGGCAATGCGTCGCAAATCAGACACGTCTACAGGCACAGCTATGACTTGGCCCTGGTTGAGCTGGAAACTCCCTTCAACTTGGCTTACATCGCTTTGCCCTATCCCAATTCCATGCCTCCATCTAACGCACGGTGCTTCGTCGCTGCCTGGAAATCTCTCCACAGATTAAACAGGTGGCATCCAGTGAGTGGGGACATTGAAGTCACAAGTTGTGGCAGATATTACCCACATCGATTTGACACATTCTGTGCCAGCAGCGAGAGTGGAACTAGACTCTGCCAGggtgACTCAGGTGGCCCTATGTTCTGCTATGCTGGGCGCAGTTACATCCTGTATGGGGTGGTGTCTGAGGGTCAGCGAGATTGCAACAGTCATGTGTCAGTACCAACCCTGTTCAGTAAAGTCTCCCGAGTGGTTAACTGGATCAGGAGCAAGATGTAATATCTGCCCTGAAGccttggggggtgggggggcagtgtcCCCTGTTTGCCTACCAAgctcactgcactgctctgcttAAACCCCCGAAGAACCCAGAGTGAAGTATATATGAAGCTGTCTTCCACACATTTCAAAggcttgacaaaaaaaaaaaaaattgatctGGGTTGAGTATGCCTCTGCGTGCCATGTATGTATCATTTGGGTTTGTAAGGGATAATCACACctagaaagagagggagaaagagagggaaagagggggaAAGAATATTAGATATTCccttcagtttttaaaatttaCAACAGGATACAAGAAAAAGAGAGTGAGAAAAATATGATAGAAAAGTCTCTAATGCAACAGTGCGGCAGAAAGtgaaccagagagagagacagggaaatgTATGCTTTCTTTTGCACTGTTCTATATTcgtctttctctgtctccctcttctctctgccccctcctcatttcccacctctctctctgtctgtctggtgtGAGTCTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168877 lncRNA upstream 60119 10849858 ~ 10853291 (+) True G134556
TU168833 lncRNA upstream 229313 10633508 ~ 10684097 (+) True AMCG00012088
TU168807 lncRNA upstream 314569 10598539 ~ 10598841 (+) True G134498
TU168804 lncRNA upstream 318004 10594849 ~ 10595406 (+) True G134495
TU168654 lncRNA upstream 643356 10269680 ~ 10270054 (+) True G134378
TU168958 lncRNA downstream 16577 10933715 ~ 10935107 (+) False G134613
TU168978 lncRNA downstream 50138 10967276 ~ 10971088 (+) False G134615
TU168979 lncRNA downstream 50138 10967276 ~ 10982794 (+) True G134615
TU168992 lncRNA downstream 131927 11049065 ~ 11055684 (+) False AMCG00012112
TU169080 lncRNA downstream 316543 11233681 ~ 11233883 (+) True G134692
AMCG00012107 mRNA upstream 4365 10905052 ~ 10909045 (+) True AMCG00012107
AMCG00012110 mRNA upstream 23163 10879944 ~ 10890247 (+) True AMCG00012110
AMCG00012105 mRNA upstream 93824 10816588 ~ 10819586 (+) True AMCG00012105
AMCG00012099 mRNA upstream 97082 10812697 ~ 10816328 (+) True AMCG00012099
AMCG00012098 mRNA upstream 109181 10803368 ~ 10804229 (+) True AMCG00012098
AMCG00012108 mRNA downstream 63540 10980678 ~ 10980866 (+) True AMCG00012108
AMCG00012112 mRNA downstream 138301 11055439 ~ 11061030 (+) True AMCG00012112
AMCG00012123 mRNA downstream 269630 11186768 ~ 11195348 (+) True AMCG00012123
AMCG00012121 mRNA downstream 296470 11213608 ~ 11224284 (+) True AMCG00012121
AMCG00012122 mRNA downstream 330044 11247182 ~ 11248652 (+) True AMCG00012122
TU168610 other upstream 595592 10303273 ~ 10317818 (+) True G134343
TU168648 other upstream 605571 10252810 ~ 10307839 (+) True G134373
TU168604 other upstream 654186 10223004 ~ 10259224 (+) True G134337
TU168639 other upstream 772953 10139954 ~ 10140457 (+) True G134366
TU168638 other upstream 778818 10134027 ~ 10134592 (+) True G134365
TU168966 other downstream 9468 10926606 ~ 10930453 (+) True G134613
TU169090 other downstream 325091 11242229 ~ 11290522 (+) False G134697
TU169086 other downstream 329544 11246682 ~ 11290522 (+) True G134697
TU169087 other downstream 367612 11284750 ~ 11293899 (+) False G134697
TU169151 other downstream 519241 11436379 ~ 11446163 (+) True G134743

Expression Profile