RNA id: AMCG00012107


Basic Information

Item Value
RNA id AMCG00012107
length 408
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00012107
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10905052 ~ 10909045 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAAGAAAAAGGGCTCCCTCCGAGTGCGGGTGGGAACATCTTGGCGGGTTATTCGCAACAAGAACGAGCAGAAAAAACTGCGATTGGTGAAGAAGGTCATCCAACATCCAAAGTACACCGACACTTCTATGGACTTCGATGTGGCTCTGCTGCAGCTCTCTGTCCCCAAGAAAATGAAGCACATCAAGACCCTGCAGCTGTTGGCTACCCGGGAGACTGCTCCTGTTGGACAGAAATGTTGGGGTGACTCGGGGGGTCCCCTGGTGTGTGACCTCACTGGAAAGTGGGTGCAGGTTGGGATAGTCAGCTGGGCAGACGGCTGCGCAGAAAAGAACAAACCCACCGTATATGCCAATGTTGGCCACTACTTCAACTGGATCAAGGAGCAGATGTCTAAGCTggactga

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04612 Antigen processing and presentation
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168877 lncRNA upstream 51761 10849858 ~ 10853291 (+) True G134556
TU168833 lncRNA upstream 220955 10633508 ~ 10684097 (+) True AMCG00012088
TU168807 lncRNA upstream 306211 10598539 ~ 10598841 (+) True G134498
TU168804 lncRNA upstream 309646 10594849 ~ 10595406 (+) True G134495
TU168654 lncRNA upstream 634998 10269680 ~ 10270054 (+) True G134378
TU168958 lncRNA downstream 24670 10933715 ~ 10935107 (+) False G134613
TU168978 lncRNA downstream 58231 10967276 ~ 10971088 (+) False G134615
TU168979 lncRNA downstream 58231 10967276 ~ 10982794 (+) True G134615
TU168992 lncRNA downstream 140020 11049065 ~ 11055684 (+) False AMCG00012112
TU169080 lncRNA downstream 324636 11233681 ~ 11233883 (+) True G134692
AMCG00012110 mRNA upstream 14805 10879944 ~ 10890247 (+) True AMCG00012110
AMCG00012105 mRNA upstream 85466 10816588 ~ 10819586 (+) True AMCG00012105
AMCG00012099 mRNA upstream 88724 10812697 ~ 10816328 (+) True AMCG00012099
AMCG00012098 mRNA upstream 100823 10803368 ~ 10804229 (+) True AMCG00012098
AMCG00012097 mRNA upstream 108577 10793886 ~ 10796475 (+) True AMCG00012097
AMCG00012106 mRNA downstream 4365 10913410 ~ 10917138 (+) True AMCG00012106
AMCG00012108 mRNA downstream 71633 10980678 ~ 10980866 (+) True AMCG00012108
AMCG00012112 mRNA downstream 146394 11055439 ~ 11061030 (+) True AMCG00012112
AMCG00012123 mRNA downstream 277723 11186768 ~ 11195348 (+) True AMCG00012123
AMCG00012121 mRNA downstream 304563 11213608 ~ 11224284 (+) True AMCG00012121
TU168610 other upstream 587234 10303273 ~ 10317818 (+) True G134343
TU168648 other upstream 597213 10252810 ~ 10307839 (+) True G134373
TU168604 other upstream 645828 10223004 ~ 10259224 (+) True G134337
TU168639 other upstream 764595 10139954 ~ 10140457 (+) True G134366
TU168638 other upstream 770460 10134027 ~ 10134592 (+) True G134365
TU168966 other downstream 17561 10926606 ~ 10930453 (+) True G134613
TU169090 other downstream 333184 11242229 ~ 11290522 (+) False G134697
TU169086 other downstream 337637 11246682 ~ 11290522 (+) True G134697
TU169087 other downstream 375705 11284750 ~ 11293899 (+) False G134697
TU169151 other downstream 527334 11436379 ~ 11446163 (+) True G134743

Expression Profile