RNA id: AMCG00012110


Basic Information

Item Value
RNA id AMCG00012110
length 2403
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00012110
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10879944 ~ 10890247 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGTCTCCCACAGACGAACTGGTCCACAGTCTTTATCAGCAGGAAGTGTGGCGGAAAGTGAGAAATGGGatgatgAGAAGTACAGTGCTAGCTCTCTTCTTCTCCCTGTCCCACTTCTACACTCTCttcccgctccctctctcctggcAACATGAGGTCCTGGGAACCCCTGGCACAACGAGGGCCCCCCCAGATCGCATCGCCACCACCGGTGATGGTAACAACAGCCCCGACACAACTATTGCAGTTCATGGTGATGGTGGCCCAGCCAAGACTGCTGGCGAAGATAGCATCCTTAACAACACAACAGCTGGCCAAGTCCACAACCTCAAccgcaacaacaacaacaacaacatggaaAAGGACAGTAATGATACACTGAACTCAAGCCCCAGTGGGCTCAACACAACCAGTGACGGCAGTGTCTCCTCCAGCTCTAGCGTACCCAGTTCCCTCCCGGACTTTCCCAATGGACTCAATGAACCCAGTGACCACAACAGTACCAGTATCTTCAGTGACTCCAGCACTCCCAGTTCCCCCCCAACCTTTCCTAATGGGCTCCAAGGCACAAGTGATGTCAGCAATACCATTAGCTCTACTGGCACCAGTTCTCCCCCAGTCTTTCCCAGTGGACTCAACGAAAGCAGGGACAACAACAATTCCAGCATCTCCATTTTCTCTCGTGCTACCAGTCCCCCTCTTGCCTTCCCTAGTGTACCCAACGAATCCAGTGACTACAGCACCACCAGTAACACCTATAGCTATAATGGTATCAGTTCTACTCCAGTCTCTCCTATGGAACCAAGCACCACCAGTGACTACAGCAATGGCAGGTTCTCTTCAAACTCCATCTCTACCAGTTCTCCACCAGAGTCTCCCACTGGACCCGGTGCCACCAGTGACTACAGGAATGGCAGGCTCTCTGGAAAATCCACATCTACCAGTTCTCCACCATTCTCTCCCACTGGACCCAGCAAAACCAGTGACGCGAGGCATGCTATTAACTCCACTACTACCAATTCCCCTCCAGTCCCTCCCAATGGACCCAACACCACTGGTGACTACAACACCACTGGGATCTTCAATGTGGAATGGGGCTCCACCTCTGACAATGGGGGTCCGGGGCCACGTGGTATCCACCTCACCTGTCTGGTCACCTTGTGGGCCCTATCAGTGACCGCCACTGTCTTTTTCGGCCTGACCGTGTTCCTGGCCATCCGCCTGTCTCAGCAGAGGCGCCTGGCGAGGTGGAGGTCAGCGAGGAAGACgcagggggaggtggggGGTACCCTCACCCCAGACACCAGCACAATGTCAACCTCCACCAACTCCTCTGAAAGTCCCTACATCAGCCCTATGAACACCACACCACAGACAACCAAGCTCACCCTTGCCCAACCTGAAACCTCCACCATGTCCTCGACCAACTTGGAAACAACATCAATCTCCCTTAAACCGGCTGCAATCCCTTTAGAGATCACCCAGATGCCTTCCTTTCCCTCCTCATCCAGCCCCCAGCGCACCACTACCCTATCCACCACACAGACCACAGCTGCCACCCAGCCCCCGAGCAGCCTGGTCACTGAACTCAAAACTAGCACCCCAGCTTCTTCTTCTACTGCCTCCCTCTCCACAATACAAGCCATTCCAGAGACCACCGCTCTGCCCACTTCTGCTTCCACTCAGCCGCCCGTCACCACGCTGGCCTCCACCACACTGGCCTCCAGTACGCTGGCCTCCACCTCAATGGACTCCCAGGCGACCCTGCAGTTAACCACCtctgccaacaaaacaaacacaccttcGCAGTCcgcagagagaaacaaacacgtGCTCTGGATGGTTATTATTATGGTTTTGGTGACGGCAGCCATAGTGGCACTGTGCGTCGGCATAGGTGCAGTTATCAACTCCCGCAGGAAGAGCCGCTCTGAGAACCTACACAGTGCGCCCGTCAAGGGAAGGCGAGGAAAGGGAGGGGAGGACGCTTGGGCCGGGCCCGTGGCTCTGACTGAGGAAAATGGGGCAGCCGTGGAGGAAGGCAAGGCCGGGGCCAAGGATGGGGGGATGGAGGAGGGCGAGAAAGCGCACGCTCTGAGCACGTTCAAGAGGAAGTCCCGTCCCATCTCCAGCCTGGCGCTGGAAGTGGAGACCGTGGAGATGAAGGAGAATAAGCCGGTGGTAGGGGAAGGCGAGACGGAGAAAGAGGGAGTGAAGGGAGAGAAAGCGGAGACCCAGCCCCTCCTTGCCCCGCCTGCCCCCTCTACCCAGGGGAATGGTCAGCTGCCCCCCCCTGTCCCCGATGACTCCCTGCCGCCCCCCTGCCCTGAAAACGATCCTtcatctctccctcctcctcttgaCTCAGGGGATGCCTTCTGTCTCACCTCTGCTGTATAA

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168877 lncRNA upstream 26653 10849858 ~ 10853291 (+) True G134556
TU168833 lncRNA upstream 195847 10633508 ~ 10684097 (+) True AMCG00012088
TU168807 lncRNA upstream 281103 10598539 ~ 10598841 (+) True G134498
TU168804 lncRNA upstream 284538 10594849 ~ 10595406 (+) True G134495
TU168654 lncRNA upstream 609890 10269680 ~ 10270054 (+) True G134378
TU168958 lncRNA downstream 43468 10933715 ~ 10935107 (+) False G134613
TU168978 lncRNA downstream 77029 10967276 ~ 10971088 (+) False G134615
TU168979 lncRNA downstream 77029 10967276 ~ 10982794 (+) True G134615
TU168992 lncRNA downstream 158818 11049065 ~ 11055684 (+) False AMCG00012112
TU169080 lncRNA downstream 343434 11233681 ~ 11233883 (+) True G134692
AMCG00012105 mRNA upstream 60358 10816588 ~ 10819586 (+) True AMCG00012105
AMCG00012099 mRNA upstream 63616 10812697 ~ 10816328 (+) True AMCG00012099
AMCG00012098 mRNA upstream 75715 10803368 ~ 10804229 (+) True AMCG00012098
AMCG00012097 mRNA upstream 83469 10793886 ~ 10796475 (+) True AMCG00012097
AMCG00012096 mRNA upstream 102862 10768044 ~ 10777082 (+) True AMCG00012096
AMCG00012107 mRNA downstream 14805 10905052 ~ 10909045 (+) True AMCG00012107
AMCG00012106 mRNA downstream 23163 10913410 ~ 10917138 (+) True AMCG00012106
AMCG00012108 mRNA downstream 90431 10980678 ~ 10980866 (+) True AMCG00012108
AMCG00012112 mRNA downstream 165192 11055439 ~ 11061030 (+) True AMCG00012112
AMCG00012123 mRNA downstream 296521 11186768 ~ 11195348 (+) True AMCG00012123
TU168610 other upstream 562126 10303273 ~ 10317818 (+) True G134343
TU168648 other upstream 572105 10252810 ~ 10307839 (+) True G134373
TU168604 other upstream 620720 10223004 ~ 10259224 (+) True G134337
TU168639 other upstream 739487 10139954 ~ 10140457 (+) True G134366
TU168638 other upstream 745352 10134027 ~ 10134592 (+) True G134365
TU168966 other downstream 36359 10926606 ~ 10930453 (+) True G134613
TU169090 other downstream 351982 11242229 ~ 11290522 (+) False G134697
TU169086 other downstream 356435 11246682 ~ 11290522 (+) True G134697
TU169087 other downstream 394503 11284750 ~ 11293899 (+) False G134697
TU169151 other downstream 546132 11436379 ~ 11446163 (+) True G134743

Expression Profile