RNA id: TU169020


Basic Information

Item Value
RNA id TU169020
length 479
RNA type TUCP
GC content 0.51
exon number 3
gene id AMCG00012111
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10934932 ~ 10961871 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTAGAGTGGGAGAGAGTCAGTCCTGTGTCCAGTAGTTGGTGAGAGGTAGATCAGTTCTGTTGTCCAGTGAGAGTCAAGATGCTTTTTCTGCAGTTGCTGTTCCTTGTCCTGGCCCTGAACACCTATGAAGtgtccAGCAGTCCTCTCTTTGGGACTTTCATAGATGGGTCGAATCTTGATTATAAAACCCATTGGACGTGGCTTGTGGGAGTGGACGTCATCACAGGAAGCAGTGGGACAATCTATCCGGGCATTCTGGTTGGAGCAAAGTGGGTTTTGACAGCCCAGCACATCTTCAATGGGGCTAGCATCAGCCGCAGCAGAGTCTGGGGGGGGGACAAAGACCTTAGGGAAAGCAATGTGTCGAATATCAGACACGTCTACAGGCACAGCTATGACTTGGCACTGGTTGAGCTGGTGACTCCCCTCAACTTGGTTCCCATCACTTTGCCCTATCCTAGATACATGCCTCCATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168688 lncRNA downstream 587207 10345062 ~ 10347725 (-) True G134402
TU168754 lncRNA downstream 628905 10303569 ~ 10306027 (-) True G134451
TU168743 lncRNA downstream 647803 10225627 ~ 10287129 (-) True G134443
TU168695 lncRNA downstream 733707 10200802 ~ 10201225 (-) True G134404
TU168696 lncRNA downstream 988443 9936100 ~ 9946489 (-) True G134405
TU169026 lncRNA upstream 5405 10967276 ~ 10971088 (-) False G134648
TU169027 lncRNA upstream 5405 10967276 ~ 10982791 (-) True G134648
TU169223 lncRNA upstream 368595 11330466 ~ 11347810 (-) False G134803
TU169245 lncRNA upstream 434089 11395960 ~ 11400701 (-) True G134819
TU169240 lncRNA upstream 534804 11496675 ~ 11769509 (-) True G134817
AMCG00012109 mRNA downstream 35339 10894348 ~ 10899593 (-) True AMCG00012109
AMCG00012104 mRNA downstream 55606 10875087 ~ 10879326 (-) True AMCG00012104
AMCG00012102 mRNA downstream 76516 10852609 ~ 10858416 (-) True AMCG00012102
AMCG00012101 mRNA downstream 86457 10837316 ~ 10848475 (-) True AMCG00012101
AMCG00012103 mRNA downstream 98327 10830517 ~ 10836605 (-) True AMCG00012103
AMCG00012114 mRNA upstream 25371 10987242 ~ 10988426 (-) True AMCG00012114
AMCG00012113 mRNA upstream 28746 10990617 ~ 10994160 (-) True AMCG00012113
AMCG00012116 mRNA upstream 41839 11003710 ~ 11016852 (-) True AMCG00012116
AMCG00012115 mRNA upstream 68289 11030160 ~ 11039337 (-) True AMCG00012115
AMCG00012117 mRNA upstream 127405 11089276 ~ 11103610 (-) True AMCG00012117
TU168910 other downstream 123051 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 678894 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 683817 10250271 ~ 10251115 (-) True G134445
TU168677 other downstream 690008 10244421 ~ 10244924 (-) True G134397
TU168739 other downstream 704489 10212142 ~ 10230443 (-) True G134441
TU169224 other upstream 368595 11330466 ~ 11386979 (-) True G134803
TU169384 other upstream 1112133 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 1157409 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 1229684 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 1240891 12202762 ~ 12213799 (-) False AMCG00012174

Expression Profile