RNA id: TU168992


Basic Information

Item Value
RNA id TU168992
length 434
lncRNA type sense_over
GC content 0.45
exon number 3
gene id AMCG00012112
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11049065 ~ 11061030 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTcaaaccctctctccttcacaccCCTCTGTTTCATAGATTCATCGCAAagtcttgctttctttctagaatcaattctgagccttgtttcgtgtttgcttctctgtgttttttgacctcttgctatcttctctcgtttaccccttctggatctccccactagcctgttcaCCTGATCGATCGACCTTGGACtgtctctgttttctctctctcgttttgcccttattggattatctgcttcaacttctagcctgcacttggatcccttCCTTTGGTCCTTGTGGACATGACACTATCAGAGTAGAAAGTATCATCTGACAAATTAAGATGCGATAGGATACATGATTGTCCTTTGTCATTAGCAGAATCACAGGCTCAGGCAAATGTCTGTGGACAGGCCCCCCTCAACACCAGGATCGTGGGGGGTGAGTCNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168979 lncRNA upstream 66271 10967276 ~ 10982794 (+) True G134615
TU168978 lncRNA upstream 77977 10967276 ~ 10971088 (+) False G134615
TU168958 lncRNA upstream 113958 10933715 ~ 10935107 (+) False G134613
TU168877 lncRNA upstream 195774 10849858 ~ 10853291 (+) True G134556
TU168833 lncRNA upstream 364968 10633508 ~ 10684097 (+) True AMCG00012088
TU169080 lncRNA downstream 177997 11233681 ~ 11233883 (+) True G134692
TU169092 lncRNA downstream 244650 11300334 ~ 11302065 (+) True G134698
TU169157 lncRNA downstream 448276 11503960 ~ 11504648 (+) True G134749
TU169172 lncRNA downstream 563493 11619177 ~ 11870630 (+) True AMCG00012152
TU169183 lncRNA downstream 655566 11711250 ~ 11766411 (+) True G134766
AMCG00012108 mRNA upstream 68199 10980678 ~ 10980866 (+) True AMCG00012108
AMCG00012106 mRNA upstream 131927 10913410 ~ 10917138 (+) True AMCG00012106
AMCG00012107 mRNA upstream 140020 10905052 ~ 10909045 (+) True AMCG00012107
AMCG00012110 mRNA upstream 158818 10879944 ~ 10890247 (+) True AMCG00012110
AMCG00012105 mRNA upstream 229479 10816588 ~ 10819586 (+) True AMCG00012105
AMCG00012123 mRNA downstream 131084 11186768 ~ 11195348 (+) True AMCG00012123
AMCG00012121 mRNA downstream 157924 11213608 ~ 11224284 (+) True AMCG00012121
AMCG00012122 mRNA downstream 191498 11247182 ~ 11248652 (+) True AMCG00012122
AMCG00012127 mRNA downstream 246770 11302454 ~ 11312044 (+) True AMCG00012127
AMCG00012128 mRNA downstream 304555 11360239 ~ 11382588 (+) True AMCG00012128
TU168966 other upstream 118612 10926606 ~ 10930453 (+) True G134613
TU168610 other upstream 731247 10303273 ~ 10317818 (+) True G134343
TU168648 other upstream 741226 10252810 ~ 10307839 (+) True G134373
TU168604 other upstream 789841 10223004 ~ 10259224 (+) True G134337
TU168639 other upstream 908608 10139954 ~ 10140457 (+) True G134366
TU169090 other downstream 186545 11242229 ~ 11290522 (+) False G134697
TU169086 other downstream 190998 11246682 ~ 11290522 (+) True G134697
TU169087 other downstream 229066 11284750 ~ 11293899 (+) False G134697
TU169151 other downstream 380695 11436379 ~ 11446163 (+) True G134743
TU169350 other downstream 975213 12030897 ~ 12031490 (+) True G134898

Expression Profile