RNA id: AMCG00012117


Basic Information

Item Value
RNA id AMCG00012117
length 3521
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00012117
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11089276 ~ 11103610 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCCCCTCAACACCAGGATCGTGGGGGGTGAGTCTGCCCCACCTGGGAACTGGCCCTGGCAGGCGAGTCTCCATCTGGACGGGTCCAATGTATGCGGAGGCTCCCTGATCTCCAGTGAATGGGTGCTATCTGCTGCACACTGCTTCCAAAGcCCTGCTATGTCCAGTCGGTGGACTGTGTATCTGGGATTACAGACCCAGCTGAGCTCTAACCCGAATGCACAGTTCAGGGGGGTCCAGCAGATCATCGTCCACCCCAGTTACGACTCTACATCCAACAACAATGACCTTGCTCTGCTGAGACTGAGCAGCAACGTGTCCTTCACCAACTACATCCAGCCCGTCTGTCTGGCGGACAGCAACAGCACCTTCTACAATGGCACTGAGTGCTGGGTCACTGGCTGGGGCAACATTGCCTCTGGAgTACCTCTGGGAGGTAACCAGACACTGCAGGAGGTTGAGATACCCATCATTGGGAACAATCAGTGTGGCTGTCTCAACGACGTGGTGTTTGGAGCAGGCAGCATCACCAGCAACATGCTATGTGCTGGACTGCTGGAGGGGGGCAAGGACTCCTGTCAGgGAGACTCTGGGGGTCCCTTGGTCTGTAAGCAGGGCTCTGCCTGGGTTCAGGCTGGCATTGTGAGTTTTGGAGAAGACTGTGCCAAACCCAATTTTCCTGGGGTGTACACCAGGGTGTCCCAGTACCAGGACTGGATCGAATCACAGGTGGGGAACAGCACAATAGGTTTTGTGATCTTCACCTCCAACGGCATTGACCCTGACAGCAGTTACATATGTGAAGTAACAACACCGAAAACAACTACTGCACCAACTATTGAGCCAAACCCAGTAGAAATCTGTGGTCGGCCCATAGGATCAGCGGACTGGCCCTGGCAGGCTAGTCTGCACCACGATGGGAATCACGTCTGTGGGGGATCTCTGCTCTCTAGCCACTGGGTGATGACAGATGCACAATGCTTACCCAGcTCTGCAAATCTCAGCCAGTGGAGGGTGTTTCTGGGCAGATTGAATCAGAATGGATTCAACCCTTTTGAGGTGTCAGCGGGAGTCCAGAACGTCATCCACAGCACCTTCAGTGGCCCCAACATCGCCCTCCTGAAACTGGACACTACAGTCTCCTTCATCAACAACATCTTGCCCATCTGCCTGCTAGGTGTCGGTACCTTATTGGGCTCTGGTCTCGACTGTCAGGTTACTGGCTGGGGTAATGTGACCGGAGAGGGGATGCTTGAGATAATGAATGCAAGGCTCACCCAGTGTGTCAACGCTTCCTCTCCTGACATAATCTGTACTGAACCCCTGGACCTGAAGCAGGGATACTTGGGTGGTCCCCTTGTCTGTAACCTCTTCTTCGCATGGGTTCAGGTCAGCGTCATCACCGTCAACAAAGAGGATCGCGCCCTCCTGCCCAGGGAGTTCGCCTACATAACCAAATTCGAGAACTTCCTGCGGGAGAATGTGGGCTCCAGCCTTCCCATCCTTAGACCCATCTCGAGCTCTGCTCCCAAGGCCATCCAGGCAGTCTCACTTATTCTTTTCCCACTGCTGGCAATCTGGATCTAGGCAGTGTGACCGAACTCATTGCCGGCCTCTTGTTGCTCCTCATACAAGCATACTAACActaaatgttcttaaaaataatttatgaagCATATCATTGATTTGGGAGAGGATACACTATTATTAGGCCTTATAGAGAAGCAGAGCCCAGTGATTCCATAGCTTTAATTTTATTACTGGAGCAATCAACAATCTCAAGTACTGTTCTCTTCATTCAGCTTCGCTGTGAAGTCTTCCCAGAAAACACTGATCAAATTAATCGAGTTACCCTTCCATGTAGcaaataatagcaaaatacCTCTAGTTTGATTACACCTGTAAACATATTATTAGGTGCCAGCCAAAAgttaaaaaacagcattttacaATCTAAAACACTCAGGAGttaatcatattgttttaaagtttaactTTAAATCTGacttaatacaaattaaaaaaaatattattagttgctttatcaatttgtttgtttatgtagcctattgtGCACGGAGGAGATTAAGAATAGATTGTCATATAATATACACACCAACCAACATTACCCTAAACATGACCCTGTCCATTTTACCAGCTTCACATAGCAAAGTCAAAAAATCGGAAGCACATTAAAAAactcagaataaaaaaataaaataaacatgtgctaCCTACAACTAGGCTATTACTGCTGTCTACTAAAGCCTTTCTCAGCACTGTCACAGTCTCACCTGCTATTCCTTCAGATCACCACCtgaggtctctctctcccgagtATTAATCcctgtgctgctctctctctgttcccgGATCAATCAGTCACATTACATTCCTTTCATTCACGTGCACTTGTTCTGTCTTTCCCCTCTCCCCATTGGTCTTTTACCCTTTACCCAGTCGTCCCATTCTCcttaacacagtatataaacccctttgttccATAGTCTaattgtgaagtcttgcattctctcttGAATCATTTCTAAGCACTATTCCTTGTTTACTGACTGTGTTTCGACTCCTGTTTTCCTGTCCTTGACCACCTCTTTTGGATCTCCCAGTTtaacctgtttgcctgatcgatcGACCCTGAACTGTTTCTGGTTTCCCTTCTGGATTTCCCCTCttggattgtttgcctttctgcTTTGCTACTAAAGAGCCTGCATTTGGATCTATCCACCTTGCCTTCGAGAACATTACAAGCACCTTCTTctgcaatgttatttttgttattaatattgttgatGGCCCCTTCCCACACCTATGGACTTTACACTTTTATGTGCATCGCTCCATTTATATAGACATGGAGAGTTTACATTGGCAGGATTTCTGAATCAGATCTCACTGTAAGAGGATTTGAACAGGATTTGAAGtgtcatgtaaaaaaaatattgagagGCTATGCTccacaaacacatttacatcTCTTTCAAAATGATACTGCAGGCAAGGATGAGCCATTGTAGATGGATGGGAGTTTGAAGTCAGCCAATGGCATTTTTGTTAGCCAGGCAGGTTGTCCAGAGTGTTGCCTGAATACTTTTTACACATATGGACTATGCTTTAACACATTTGTATGCcttttaaaattagaaattaGACATTATTGATGTGAGTGTGGAATGTTAAATATTGCAATGCAAGGCTCTCAAGCAGATAAATATATTATCtgtcttttcaaataaattgtaaacaCAACCCTTAGTAACCTGCTATATTTTTTCCTAAAACATCTATAAATTGTGTTCCTTTTACCTCCAGTAGACAATGTATCAGGGTGCAGGGGAAACAAAATCacttaaacagaaaatataacaCAGATGTTCAAATATACATCTCCATGTTAATATACAATTTCAATCTTCAGTAGCTTAAGTAGCCCATGTGCGGaagattcatacatttaaacctaacaattgtaaatgaaaaataaaaaaactcctTACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169027 lncRNA downstream 106485 10967276 ~ 10982791 (-) True G134648
TU169026 lncRNA downstream 118188 10967276 ~ 10971088 (-) False G134648
TU168688 lncRNA downstream 741551 10345062 ~ 10347725 (-) True G134402
TU168754 lncRNA downstream 783249 10303569 ~ 10306027 (-) True G134451
TU168743 lncRNA downstream 802147 10225627 ~ 10287129 (-) True G134443
TU169223 lncRNA upstream 226856 11330466 ~ 11347810 (-) False G134803
TU169245 lncRNA upstream 292350 11395960 ~ 11400701 (-) True G134819
TU169240 lncRNA upstream 393065 11496675 ~ 11769509 (-) True G134817
TU169274 lncRNA upstream 456487 11560097 ~ 11795338 (-) True G134840
TU169280 lncRNA upstream 499913 11603523 ~ 11604157 (-) True G134844
AMCG00012115 mRNA downstream 49939 11030160 ~ 11039337 (-) True AMCG00012115
AMCG00012116 mRNA downstream 72424 11003710 ~ 11016852 (-) True AMCG00012116
AMCG00012113 mRNA downstream 95116 10990617 ~ 10994160 (-) True AMCG00012113
AMCG00012114 mRNA downstream 100850 10987242 ~ 10988426 (-) True AMCG00012114
AMCG00012111 mRNA downstream 127484 10957189 ~ 10961792 (-) True AMCG00012111
AMCG00012119 mRNA upstream 11999 11115609 ~ 11122761 (-) True AMCG00012119
AMCG00012118 mRNA upstream 38028 11141638 ~ 11150214 (-) True AMCG00012118
AMCG00012120 mRNA upstream 62199 11165809 ~ 11171700 (-) True AMCG00012120
AMCG00012125 mRNA upstream 112533 11216143 ~ 11224247 (-) True AMCG00012125
AMCG00012126 mRNA upstream 159879 11263489 ~ 11265569 (-) True AMCG00012126
TU169020 other downstream 127405 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 277395 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 833238 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 838161 10250271 ~ 10251115 (-) True G134445
TU168677 other downstream 844352 10244421 ~ 10244924 (-) True G134397
TU169224 other upstream 226856 11330466 ~ 11386979 (-) True G134803
TU169384 other upstream 970394 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 1015670 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 1087945 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 1099152 12202762 ~ 12213799 (-) False AMCG00012174

Expression Profile