RNA id: AMCG00012128


Basic Information

Item Value
RNA id AMCG00012128
length 2681
RNA type mRNA
GC content 0.55
exon number 15
gene id AMCG00012128
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11360239 ~ 11382588 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aggCAGAGATGCAGGTCTCATCTAGTGGTAAGAAGGCCGCCGGCATGTCTGTTGTTGTCAGTCCGTGGAAAGTATACTTGGGAAGACTGAAACTGCGAATCTCTGATACCAACGAACAGTCAAGGGGGGTCCAGAAGATCATTATCCACCCTAACTACGACTCTTATACCAACGACAACGACCTTGCCCTGCTGAGACTAAGCAGCCCCGTGTCCTTCACCAACTACATCACGCCCATCTGCCTCCCGTCCAAGAACAGCACCTTCTACAACAGCACTGACTGCTGGGTCACTGGCTGGGGCGACACTGCTGAAGGAGTGGCCCTGGGAGGTAACCAGACCCTACAGGAGGTTGAGGTGCCCATCATTGGGAACAGAAAGTGTAACTGCCTGTATGGAGTGGATACGATCACTAAGAACATGGTCTGCGCTGGGTTGCTGGCAGGGGGCAAGGATGCTTGCCAGggaGACTCTGGAGGTCCCCTGGTCTGTAAGCAGGGCTCTGCCTGGGTTCAGGCTGGCATTGTGAGTTTCGGAGAAGGTGTGCCCAACCCAATTTACCTGGGGGTGTCCCAGTACCAGGACTGGATCAATGGGCAGGTGGGGTCCAACACTCCAGGGTTCATTACTTTCACCTCCAGTGGCATGGACAGCGACAGCAGTGTTACCTGTGCAGGGCTACCATTGCCTACAACAAGTTCTCACACTACTAAACGACCACAAACAACGACGGTCTCCATTACTAATCCTCCAGATTCTGACAAGAATCTCAGTGATGCTGTACCCAATTCTCAGAGAGcTCTAACCTGTGGGCAGGCCTCCCTCAACCCCAGGATTGTGGGGGGTGGACCTGCCCAGGCGGGGTACTGGCCCTGGCAGGTGGTTCTCTACAAAAACGGGCACTTCATATGTGGAGGCTCCCTGATCTCCAGTGAATGGGTGCTGTCTGCCGCACACTGCTTCGCAAGccCTGTTGTTCTCAGTCAGTGGACTGTATATCTGGGAAGGCTGACACAGCAGGGCTCTAACCCCAACGAACAGTCCAGGGGGGTCCAGCAGATCACCATCCACCCAAGTTACAACTCAGCTACCCACAACAATGACCTCACCCTGATGAGACTGAGCAGCCCTGTCTCGTTCACCAACTACATCCAGCCTGTCTGTCTGGCAGACAGCAACAGCACCTTCTACAATGGCACTAACTGCTGGGTCACTGGCTGGGGCAACATTGCCTCTGGAGTGTCTCTGGGAGGTAACCAGACCCTGCAGGAGGTACAGATGCCCATCATTGGGAACAAACAGTGTGGCTGTCTGAATGATGTGGCATTTGGAGCAGGCAGCATCAGCAGCAACATGCTCTGTGCTGGACTGCTGCAGGGGGGCAAGGACTCTTGTCAGGGAGACTCTGGGGGTCCCCTGGTCTTTAAGCAGGGCTCTGTCTGGGTTCAGGGTGGCATTGTGAGTTTTGGAGAAGGCTGTGCCCTACCCAATCTTCCTGGGGTGTACACCAGGGTGTCCCAGTACAAGGACTGGATCAATGGGCAGGTGGGGGCCAGTACTGCAGGGTTCGTGACCTTCATCTCCTCTGGCACTGATTCTGACAGCAGTTTCAAATGTGGAGCAACAAACACTGCATCCCCTGTATCCACTACAACCACTGCATCTCCTGTATCCACTACAACCACTGCATCCCCTGTACAGACCTGTGGGCGGCCCAGGCTGAACACACGCCTCCTCGGGGGAGGCCCTGCCCAGGCCGGGTACTGGCCCTGGCTGGCTAGTCTGCACCGCAATGGGACACACGTCTGTGGGGGATCACTGCTCACCAGCCAGTGGGTGATGACAGCCGCACAGTGCATACCCAGCCCTGTGAATGTCAGCGAGTGGAAAGTGTACCTGGGCAGATTGAAGCAGAATGGCTCCAACCCCTTCGAGGTGTCAGTTGGGGTTGTGAGTGTCACTTTCAGCACCCTTAACGGCACCAACATCGCCCTCCTGAAGCTGAACACCAACGTCTCCTTCAGCGACTACATCCTGCCCGTTTGCCTGGCTGGGGGGAGCAGCTCCTTCGGCCCTGGCACCAAGTGCTGGGTCATGGGCTGGGGCAACGCAAACGGGCAGGGGGAGCAGATCCTCCAGGAAGTGCAAACGTCCATCACAGCATGTGGAAATACCTCCTCTACGGACAAGATCTGTACTTCAGCCCTGGACCTGGAACTGCGCTGGGCAGTGTGCTCTAGCACGGAGCAATGGACCAGTCCGCACGTGCAACTGAAGGAGCCTTATAATCTGCAAGAAGTCCAGCTGCCCATCATAAAAAACAAGCGCTGCGAACAGATGTACAAGAAGCCACCGAAGACAGATCTGCCCAAGATCAAAATCACTTCAAAGATGATGTGTGCTGGAGACAAAGCTGGAGGGAAGGATACCTGCCAACCTGTAGCCCAGCACTGCCAGTGCGAAGTAAAGTCATCAGCCGCAGCCTCGGGCAGAGAGACTGGCTGGATGTACTGGGTGAAGTACACTGGCTCGCTGAGCTCCACCAGGGCGATGTCGTGGCCCTTCTCGCTTTTGTTAATCACATATTTCTCATGTCTGATGAACTTCTTCATGGTCCGTGTGTGTAGATTGGGGTCTTTCAGCTTGGACACTCCCAGAATCACCGTAGCATTATCCAGCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169092 lncRNA upstream 58174 11300334 ~ 11302065 (+) True G134698
TU169080 lncRNA upstream 126356 11233681 ~ 11233883 (+) True G134692
TU168992 lncRNA upstream 304555 11049065 ~ 11055684 (+) False AMCG00012112
TU168979 lncRNA upstream 377445 10967276 ~ 10982794 (+) True G134615
TU168978 lncRNA upstream 389151 10967276 ~ 10971088 (+) False G134615
TU169157 lncRNA downstream 121372 11503960 ~ 11504648 (+) True G134749
TU169172 lncRNA downstream 236589 11619177 ~ 11870630 (+) True AMCG00012152
TU169183 lncRNA downstream 328662 11711250 ~ 11766411 (+) True G134766
TU169199 lncRNA downstream 436669 11819257 ~ 11844832 (+) True G134779
TU169323 lncRNA downstream 533756 11916344 ~ 11917737 (+) False G134877
AMCG00012127 mRNA upstream 48195 11302454 ~ 11312044 (+) True AMCG00012127
AMCG00012122 mRNA upstream 111587 11247182 ~ 11248652 (+) True AMCG00012122
AMCG00012121 mRNA upstream 135955 11213608 ~ 11224284 (+) True AMCG00012121
AMCG00012123 mRNA upstream 164891 11186768 ~ 11195348 (+) True AMCG00012123
AMCG00012112 mRNA upstream 299209 11055439 ~ 11061030 (+) True AMCG00012112
AMCG00012136 mRNA downstream 3985 11386573 ~ 11388762 (+) True AMCG00012136
AMCG00012138 mRNA downstream 21072 11403660 ~ 11405016 (+) True AMCG00012138
AMCG00012134 mRNA downstream 26856 11409444 ~ 11418782 (+) True AMCG00012134
AMCG00012137 mRNA downstream 53929 11436517 ~ 11440510 (+) True AMCG00012137
AMCG00012135 mRNA downstream 57924 11440512 ~ 11445488 (+) True AMCG00012135
TU169087 other upstream 66340 11284750 ~ 11293899 (+) False G134697
TU169090 other upstream 69717 11242229 ~ 11290522 (+) False G134697
TU169086 other upstream 69717 11246682 ~ 11290522 (+) True G134697
TU168966 other upstream 429786 10926606 ~ 10930453 (+) True G134613
TU168610 other upstream 1042421 10303273 ~ 10317818 (+) True G134343
TU169151 other downstream 53791 11436379 ~ 11446163 (+) True G134743
TU169350 other downstream 648309 12030897 ~ 12031490 (+) True G134898
TU169413 other downstream 789950 12172538 ~ 12172802 (+) True G134955
TU169416 other downstream 798473 12181061 ~ 12181320 (+) True G134958
TU169428 other downstream 808967 12191555 ~ 12192408 (+) True G134968

Expression Profile