RNA id: AMCG00012131


Basic Information

Item Value
RNA id AMCG00012131
length 4825
RNA type mRNA
GC content 0.47
exon number 14
gene id AMCG00012131
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11284737 ~ 11297103 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGCGCATTcaccttatttattattattattttccccccccCGTTTCATTTTAAAGACAGCATTTAAcccaaagtttgttttttaaaaacagcaagaGACACGATCCCGGACATGGCGTCGAACGattatTCCCAGACTGCTGCCCAGGGGTACGGCTCCTACGGTGGGCAGGCCAGCCAGGGCTACAGCCAGCCGGCTACTCAAGCCTACAGCCAGCAGGGCTATGGAGGCTACGGCCAGGGCACAGAGAGCAACGCTGCCCCGTACAGCCAGGGAGGATATGGCTCCACCTATGGCCAGTCTCAGACAGGTGGCTATGGAGCCCAGCCCCCATCACAGGGCTATAACCAGTCCAGCCAATCCTACGGCTCAGGGGGCTACAGCAGCAACCAGCCACCCCAGAGCAGCTACAATCAGCAGTCCTCTTACCCGGGCTATGGCCAGCAGCCTTCCACAGCCACCTCTACTGCCAGCTATGGTAGCAGCTCCCAGACGGCGACTTATGGGCAGCCCCAGAGCGGGGGAGGCTATGGTGGGCAGCAGGGGGGCTACGGCAGTGGCAGTCAGCAGCAGCcgccgcagcagcagcagcagcaacagagcCAACATGGTGGGGCACCCTACAGCCAGCAGCCCAGTTACAACTCTCCGCCACCCCAGAGCTACAGCCAGCAGGGCCAGTATGGTCAGGGAGGAGGATACGGACAGGATGCTCCCCCGATGGGCGGAGGTGGTGGCTATGGGGGACAGGAAGGAGGCTTTGGTCAGGATGGGCGCGGCCGGGGCCGTGGGGGCGGTGGTTTCGGAGGACGTGGAGGGGGATTTGACAGAGGCAGCCGGGGCGGGCCTAGGGGCCGAGGAGGAATGGGAATGGGGGATCGAGGAGGATTCAATAAGTATGGTGGTAAGTCCAACAACCAACGCAATagtttgcatttcacaatttggGGGGTGGTGAGGGTGGAGCAAGGGCTGTGGTTCTGTGGGAGGGGAttgtggggttggggggtggtgATTTCAATCTGGACAGCCcatttattgatgtattcagtcccaggtctcttgtaCAGTTTTCTGAAACATGTTCTACATTGCCAACTGAGACTTTCACCAACTCGCATGCACttccatgttttattcatgatcGGAGGTTGTGCTGGTTCTAGTACAGCTCTCGAACCAACCAGTGTCATTCAGGAATGCATTATCATGGTATTCTATCGCATCTTGTAGGTTTTTGCTCTGGTAAGGGTCATAGTTCTGAACTGCACAAAACCTACAAACGATCTCTGTAGTTGTTGCCTGTGAGGGTTCAAACAGTTCGTGGTTTACCTGCTTACTGCTAAAGGTGGAGAGGAGTAAAGCTGCTCAGCCTCGTGCCTGGGTTCATGGGGGAGCTGAAAGAGCAACTTGAGGTTGCAGACTGTCTTGCCAGACTTGTGGTCTGAGTGCTGTGGTTGTTctcaaatataaataagcaaatgtgtGGTGCTACTCAATCACGTTCTGATTTAAAttgcaatcatttaaaatataaatggttcTAGTCTTTAACTTTTGAGATTCAATCAGCCAAGGACACTTGACATAACCTTGTGAACATCCAATAAAATGCCACATTATAATAGCTGGAAGGTTAGTGTTCTCCGTGATAGAGGAAGTAAGTTGAATTAAATCTCCATGGTAAAGGCTTTTTAATGAAGCTTGCCAAAAGGTCTTCACCCTTGAGTTAAAGGGAAGGGGAGTGttctggttttaattttaatgtctgGCACAATATTTTATCTTCAATATTTATAATGTGAATGTAGGTTTAAAGTTAAAGGATTCAATGAGAAATGTTCCTTTCTACACAAGTACAGCTCATCCAGTGAATTGATTCTGGGTGGAGTGGGTGGGTGTTTACTGGGTGTTTTGTCAAATAAGGTTGCCGGAATTGGAACCAAATTTCAGTCAAGTTGGTGTGgattaatcaattttaaatttaaagcacGTACACTTACATTTTGGTTTCAGATTTAAAGTAGAgggcagttttattatttttttttttgaaaaggTGTACAGTTCAATATAATGCTAATCTGTATAGGCTCCAAGACCATAATATGTAGCTCTGTGACTTAAAGCTATAGGGTTTATTGTAAAGATGCAACTTTTAATATCTAAGTGAATGTTTTAAGGATGGTCTTGTCCTGtaagaacaaacaaactctCTAGGTGGTTTGTCTCGAAGTATTGTCAATCTCTCCGTAAGTCTTTTAAGAACAGGCCATTGTCGGGTGCGTTACTTAATGGTGTGGTTTCTGAGTGGATAAATCACGTACATTGGTAACTTTCAAGTTGTGCACTGACCTGAAAATAGATCTGTATAGGAGTTGGGTCCTTAAAACCCTGTGGTGGTTTTGTATCTGTAAAATGAAAGTCATATTGGAAAGTTGCTCTCCTTCTAGATGGCTGTATACTGAACATTCCCAAATGTAGGTGTGCTTCACGAATGTGCATCTTAAACATTTGCTCAAGGTGATCACTTCAAGGGGAACAATACTTGTGTACATGTTTTGCAAAAATCTAACATTACACAGTGTGTAAGTGTAGAAGGATGGATTCAAGATTCTCAATGTTTGGGTGTGTGAACCACCAGTGTTTCTGGTGTTTTGGTTTTGAGGTAAGAAGTTCAGGCTGTATACTTTGAAATGGTGGTATAAGCCTGCAAGGCTTAATTTCATTGTGTGGGAGGGGTGGGGAATTGTGTGGTTTCATATTGAAACTCCAGTATCTCCCAGTGTGTTTTGCAAGTGACTCTGAGAATGGGTCCAGTACCCAGACTGGGGTGGTTGtaacaaatgtatgtaaaggTTTAGATTTGAGAGAGGCAGGGGTTAAAAAATGTTGGGGTTCTCAAACATTCAAGTTTACAAGGGTGGTTATTAAAACGCATGGTTTCACTTTGGTTCCAGAAAACTTAAAGCTGTAAAAAGTgatggtttttaattttacattcacCGGTATTGAACAGTCAACTTGTATAGTCCTTTGTCAGGGGTGTATTGCATgttacttgatttttttttttaaggacctTGGTGTAGAACTTAAGAGGAGGGGGGGGAACAAATCCAAATGGTTTCCTTGGAGTGTTAAATGGAGAAATTAAGTTTCATAGTCCTGTTTGTAATGGAAAAATGCATGTTGCTCACTAGGTGTTGTGACCTTGGTAATACTGTTGTCGCAGGTTTCTTTAAAACCATATTTGAAACAAATGGACTGTGGCTTTATCAGTGGATACAGCTGAACATGTCTGAAATCTCATGAAATGCTATGTTCAAAAATGGTCTACCTATTCCCTGGGTTCAGAGTTTATAAAAGCAAATGGTTACTTTGTACTTCATACTTATTTAAAGGGGACTAATGCATGTCTTATTGGGAATTAACAGAAGAGTTGAAATTGTAATCTTTTAATGGTATCATGTAGTGTAAACCTAATGTGCCATTATGTGATTGTATAGAAACGcgcacgttttttttttttagggcaTCTTTTTATTAAGGGACCACTGCATGATCCCGGTGTGGCTGTACTACTGTTAACGGGTGTGTGGATGGGTTTCTGTTCCTGGGACAATGCCCATGTTCATGGCAAAAGGCAATGTGTGGAAGACTATGTTGCTCAGTCATCAGTCTCTCTGTACTTAagtcttctctccctctctttccctctccttaAGGACCTAGAGACCAGGGACCTGGGGGCCCCAATCCCATGCAAGAGCAGGATAACTCGGATAACAACACCATCTTTGTCCAGGGTCTGGGAGACAGCTGCACCGTGGACTCGGTGGCTGACTTCTTCAAGCAGATTGGTATCATTAAGATCAACAAGAAAACCGGCCTGCCTATGATCAACCTGTACACTGATCGGGAGACGGGGAAGCTGAAGGGAGAAGCCACGGTCTCCTTCGATGACCCCCCCTCCGCCAAGGCAGCCATCGACTGGTTTGATGGTAAGGAGTTCAATGGAAATCCTATCAAGGTGTCCTTCGCTACACGCAGGGCGGACTTCGGACGAGGCGGCGGCAACATGAGGGGCGGACGAGGCCGGGGAGGTGAGTCCTGGCCCATGGGTAGAGGAGGAGGTGGGTTTGGAGGTGGCCGGGGAGGCGGCTATCCCAGCAACAATGGAGGTGGTGGCGGCGgcggtggaggaggaggaggacagcaGAGGGCCGGAGACTGGAAGTGCTCAAACCCGGTGTGTGGTAATCTGAACTTCTCCTGGAGGAATGAGTGTAATCAGTGCAAAGCCCCCAAGCCAGAAGGGGCAGGAGGGCTCCCCCCAATGGGAGGTGGATATGGCGGTGACAGAGGTGGCCGTGGTGGATTTGACCGAGGTGGCTTCCGTGGCCGAGGGGGAGACCGTGGGGGCTTCCGAGGGGGCCGTGGAGGAGACCGCGGCGGCTTTGGTCCGGGCAAAATGGACGGCAGAGGAGAGCACAGACAGGATCGCAGAGACAGGCCGTACTAATCTCCTCTGTCGATCACTGGGACCAGTATTCCACCTCCTACCCTCACCCCTCTGACGTCCTCTGTAAAATCCCCTCCACCCACCCcggtttctttttgttttgttttttatatacattgtgtttttaagttgttGCTCAGTTTGTCCATGTCTGCCCAGCCTTTGGGAGTCCTGTTGAGTTTTTTGTAAacttgcttgtttttaaaatcttgcCATTTTGAATAACTGTTGGGTTTGAAGAAAACTACatgaaaatcaaaattaaaaatttaaaaatgacatgaCTTGCTGGTGTCCT

Function

GO: NA

KEGG:

id description
K13098 TLS, FUS; RNA-binding protein FUS

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169027 lncRNA downstream 301946 10967276 ~ 10982791 (-) True G134648
TU169026 lncRNA downstream 313649 10967276 ~ 10971088 (-) False G134648
TU168688 lncRNA downstream 937012 10345062 ~ 10347725 (-) True G134402
TU168754 lncRNA downstream 978710 10303569 ~ 10306027 (-) True G134451
TU168743 lncRNA downstream 997608 10225627 ~ 10287129 (-) True G134443
TU169223 lncRNA upstream 33363 11330466 ~ 11347810 (-) False G134803
TU169245 lncRNA upstream 98857 11395960 ~ 11400701 (-) True G134819
TU169240 lncRNA upstream 199572 11496675 ~ 11769509 (-) True G134817
TU169274 lncRNA upstream 262994 11560097 ~ 11795338 (-) True G134840
TU169280 lncRNA upstream 306420 11603523 ~ 11604157 (-) True G134844
AMCG00012124 mRNA downstream 1929 11274224 ~ 11282808 (-) True AMCG00012124
AMCG00012126 mRNA downstream 19168 11263489 ~ 11265569 (-) True AMCG00012126
AMCG00012125 mRNA downstream 60490 11216143 ~ 11224247 (-) True AMCG00012125
AMCG00012120 mRNA downstream 113037 11165809 ~ 11171700 (-) True AMCG00012120
AMCG00012118 mRNA downstream 134523 11141638 ~ 11150214 (-) True AMCG00012118
AMCG00012133 mRNA upstream 924 11298027 ~ 11300821 (-) True AMCG00012133
AMCG00012130 mRNA upstream 15821 11312924 ~ 11319748 (-) True AMCG00012130
AMCG00012129 mRNA upstream 25104 11322207 ~ 11331281 (-) True AMCG00012129
AMCG00012132 mRNA upstream 50385 11347488 ~ 11350937 (-) True AMCG00012132
AMCG00012139 mRNA upstream 85176 11382279 ~ 11388734 (-) True AMCG00012139
TU169020 other downstream 322866 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 472856 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 1028699 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 1033622 10250271 ~ 10251115 (-) True G134445
TU168677 other downstream 1039813 10244421 ~ 10244924 (-) True G134397
TU169224 other upstream 33363 11330466 ~ 11386979 (-) True G134803
TU169384 other upstream 776901 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 822177 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 894452 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 905659 12202762 ~ 12213799 (-) False AMCG00012174

Expression Profile