RNA id: AMCG00012133


Basic Information

Item Value
RNA id AMCG00012133
length 1581
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00012133
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11298027 ~ 11300821 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCAGCCAATAGGCGAAGAGACTGAAGCCTTTAACACGTCGCCTGTATTATTTCCCCCTGAATTAGTTCTTTCATAAGACGAAGAGTGTAGTTGGTGGAAAGAAAGCAATAGATTATGTAAAAGAAACtaataaattgaaaaacataCCGGGGGAAAGAGAAAAGGGAAAGCAAGGCAAACCAGGAAACTGATAGgtgcacagacagaaagagggaCAAAGACAGACCGGCATTCGCACGCATTTGGAGGCGCCAGGCAGGACTGACCGAGAGGCGCTGCAGGGTCACGCCGCGCTGCGGGCATGTCTGGGCGGCAGGTCGCGTCGGCGCTGCCCCGCTGGGAGAGGGGGGTCCGGCTCCTGCTCTGCGCCGCCGGGCTGGTGCTGTCAGTGTACGCCTACCATGTGGAGACGTCCCGGGAGAGGGACGCCAGCTACCGGGCCATGTGCGACTTCAGCAGCTCCGTGAGCTGCTCCAAAGTGTTCACGTCCCGGTGGGGGCGTGGTTTTGGCCTTGTGGCACCTCTGCTGGGGAGTGACACTGTGTTAAACCAGCCCAACAGCGTGCTGGGAGTCCTCTTTTACCTGCTGCAGCTGGGCCTTGGTCAATCATTGTCCAGCAGGGCAGCGCTCTGCCTGGTTCTGTCGTCCTGGTTGTCCGTGGTGGGCTCTCTGTACCTGGCCTGGATCCTGACCTTTGTGCTGCAGGATTTCTGCGTGGTGTGTGTCAGCACCTATCTGCTCAACTTTGTGCTGCTCTACATCAACTTACGCAGGCGGGTGGCACTGCAGCCCAAAAAGGACAAACGGAGCTGAGCCGGACAAGCTGACACAGGGAGTCTATTCTCCTGCTGACTGCCAGAGAATCTGTACTCCTGCAGTCTGACACTGAGCATATACACACCTATTGTAGTGTAACCGCACGTACACTGTAACAAAGTGTACCGTGGCCCAAACAAAGTCAATAGACCCCTAAGAAGAGTGTGAGCCCATTGCTGAATACACATTATGCCCtctattcaattaaattaaattcaaagtgctttattggtATGACTGATTTAAGCATTTATTCAAGCAATAATGACCATTGTCAAACAATTACACACTGGGGTGAACAGGCGCACAGTGTGAAGGAAAACTATACCAGCTATGAAACTGGTAACAATCCCATCTCTGGGATAACagagatacacaaacacaacatcTACCCCATAACAAACCTGTGAAGAGGTATGTAAAGGGAAAGCTGTAGTGCATacctttaaaacattacaagaaTTTATAAAAGCCTGCTCAATGTCTTCAAAGACTGCTGGGACAGATTATTTTAGAAAAGCTTTGTAAACAGTGTCTACAGTACATTCACTTAAAACAATCCTTTCTCTTAAAACTCTTGGAACCAGTTTTAGATGGGTTGGGGGAGTGTCTGTGTCAATTAGTTTGATCTTGTTACgtggaaaaaaaatcagtgttactttacttttattctttcaCCCCCTGTTCCTCCCatcccccaaaaataaaatattttttacagtcTTTAAAGGGTGAGCGATTATTTTGGTCTGTTTCATATAC

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169027 lncRNA downstream 315236 10967276 ~ 10982791 (-) True G134648
TU169026 lncRNA downstream 326939 10967276 ~ 10971088 (-) False G134648
TU168688 lncRNA downstream 950302 10345062 ~ 10347725 (-) True G134402
TU168754 lncRNA downstream 992000 10303569 ~ 10306027 (-) True G134451
TU168743 lncRNA downstream 1010898 10225627 ~ 10287129 (-) True G134443
TU169223 lncRNA upstream 29645 11330466 ~ 11347810 (-) False G134803
TU169245 lncRNA upstream 95139 11395960 ~ 11400701 (-) True G134819
TU169240 lncRNA upstream 195854 11496675 ~ 11769509 (-) True G134817
TU169274 lncRNA upstream 259276 11560097 ~ 11795338 (-) True G134840
TU169280 lncRNA upstream 302702 11603523 ~ 11604157 (-) True G134844
AMCG00012131 mRNA downstream 924 11284737 ~ 11297103 (-) True AMCG00012131
AMCG00012124 mRNA downstream 15219 11274224 ~ 11282808 (-) True AMCG00012124
AMCG00012126 mRNA downstream 32458 11263489 ~ 11265569 (-) True AMCG00012126
AMCG00012125 mRNA downstream 73780 11216143 ~ 11224247 (-) True AMCG00012125
AMCG00012120 mRNA downstream 126327 11165809 ~ 11171700 (-) True AMCG00012120
AMCG00012130 mRNA upstream 12103 11312924 ~ 11319748 (-) True AMCG00012130
AMCG00012129 mRNA upstream 21386 11322207 ~ 11331281 (-) True AMCG00012129
AMCG00012132 mRNA upstream 46667 11347488 ~ 11350937 (-) True AMCG00012132
AMCG00012139 mRNA upstream 81458 11382279 ~ 11388734 (-) True AMCG00012139
AMCG00012141 mRNA upstream 235205 11536026 ~ 11540090 (-) True AMCG00012141
TU169020 other downstream 336156 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 486146 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 1041989 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 1046912 10250271 ~ 10251115 (-) True G134445
TU168677 other downstream 1053103 10244421 ~ 10244924 (-) True G134397
TU169224 other upstream 29645 11330466 ~ 11386979 (-) True G134803
TU169384 other upstream 773183 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 818459 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 890734 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 901941 12202762 ~ 12213799 (-) False AMCG00012174

Expression Profile