RNA id: AMCG00012134


Basic Information

Item Value
RNA id AMCG00012134
length 1961
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00012134
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11409444 ~ 11418782 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaataaaaataaaaaatgtaacagaatATACTGTGTagatatgaacaaaataatacagttgcTCTTGATATGTGTGGTCCCAGAGAAGGACCTATGAttagtgcaaaacaaaaacaaatacataaacaaacattgcagagaaaacttgggaacattattaaaaataccaGAGATGTGTTTGCATACTTTTGGTGGGAATAATAACTTAGACTAcatggacatttaaaaaaatgtattacctgAGAGGTGGCACACATGATTGTATCTTTAATGTGAAAGGTAATGTTAATGTGATCTGTAAGACAGATACTGATCATATAACGTTTCGCTGAGACCCCACTAGGCACCTTCATATCCACCTCTGATGACAGAGACAACAGGAAACCCTGGTATCTGTATAAAAAGCCTCTGATCGTACATTATCTTCAGATACACATTGCGACAGACATCTGTACAAAGACGCACCACTTTCTGCAGATCCACCGATTCCCCAGCCCAGAGAGCTGTACAGCCAGACccacagacagactcacagacCTGTTGGGTTAAGATGctcctcctgcagctgctgtgttGCCTGCTGACACTGAACACCCTGGAAGtGTCCAGCAGTCCTCTGTCCAGGAGCTTTATAGTGGGGGGTCAGGATGCAGAAGAGGGACGGTGGCCCTGGCAGGCCTATCTCCAGATCAGTCTGAAGTATAAGCCTGGATATTCTACCATCTGTGGCGGCTCCCTGGTCAGTGAGCGCTGGGTTCTCACTGCAGCGGCCTGCTTTGATGACCCTTATGTCTTGAAGACATCTAGTGTGCGCCTGGGAGCGTACAAGCTAAAAATTCACAATTCACATGAAATAGAAATTCCCATAAAGGGGAATCCCATCATACACGAGAAGTACTTGGTTAATAAATCCCGCAATGGCTATGACATCGCCCTGGTGGAGCTCATCCCACCAGTGTCCTACACCCGGTACATCAGCCCTGTCACTCTGGCTGAGGATGACGGTGACGACTTCAGCAGGGGTTGGGAGTGCTGGTCTACAGGCTGGGGGAGAAACGGAGAGAATGACTCTCTACCATCACCTAATACCCTACAGGAAGTCCAGACCCCTGTCATTACAAACATCAGATGTAAGCATTTGCGTAGATCTAATATCAGAGACGACATGCTCTGTGCTGGGGGTGAAGGAAAGGGTACCTGCAAGggTGACTCTGGGGGGCCTCTGGTGTGTAGGGAGGGCAAAGGAGACAAATGGATCCAGGCTGGGATCACCAGCTGGGGTCATCACTGTGCAACTGAGAAACCTGGCATCAAGACCCGGGTCTCCAGCTTCCGCAGCTGGATAAAGAAGCGCAGTGGTGTCTGAGATTCTTACTGAGGACAGTCTacctggctggctggctcactgcTCGCTCTTCTGCACCCAGATCTTATGTGTTTAGACCGGCAGATAATATATCACCTACACTGTTCCCCCTGTCccctctgtccctgtgtctccctgtcctgttgtgtgtgtttttctgaggGACTCTCTGTCATCTCTTCACCTCCCCAGTCCTAGTGTGTTTATTACTGAGGGACGCTtcattatatgcattatattgctattatattcaaaattaaagttGCACAGTACattcaataacaaacaataacaaagatataattaaaatacctgTTCCATATATAGCAATTAGTAaagtatgtttaaatacatacattgaaaatatgGTTATACACAATTTTAACACTTGACATAAAGTATTCTAAATGAAACTGATAATAATAGATGATTATAAACTTCTGGGAAAAGAGTGTATTTCTGTGTCTCCAGATCCAACTCTGTGTTCATTCCTGAGGGctgccctgctctctcctctcccactgTGATATCAGCTGCTGCTCTTGGCTCTGCTCTGGGctgccctgctctctcctctcccactgTGATATCAGC

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169092 lncRNA upstream 107379 11300334 ~ 11302065 (+) True G134698
TU169080 lncRNA upstream 175561 11233681 ~ 11233883 (+) True G134692
TU168992 lncRNA upstream 353760 11049065 ~ 11055684 (+) False AMCG00012112
TU168979 lncRNA upstream 426650 10967276 ~ 10982794 (+) True G134615
TU168978 lncRNA upstream 438356 10967276 ~ 10971088 (+) False G134615
TU169157 lncRNA downstream 85178 11503960 ~ 11504648 (+) True G134749
TU169172 lncRNA downstream 200395 11619177 ~ 11870630 (+) True AMCG00012152
TU169183 lncRNA downstream 292468 11711250 ~ 11766411 (+) True G134766
TU169199 lncRNA downstream 400475 11819257 ~ 11844832 (+) True G134779
TU169323 lncRNA downstream 497562 11916344 ~ 11917737 (+) False G134877
AMCG00012138 mRNA upstream 4428 11403660 ~ 11405016 (+) True AMCG00012138
AMCG00012136 mRNA upstream 20682 11386573 ~ 11388762 (+) True AMCG00012136
AMCG00012128 mRNA upstream 26856 11360239 ~ 11382588 (+) True AMCG00012128
AMCG00012140 mRNA upstream 28672 11380073 ~ 11380772 (+) True AMCG00012140
AMCG00012127 mRNA upstream 97400 11302454 ~ 11312044 (+) True AMCG00012127
AMCG00012137 mRNA downstream 17735 11436517 ~ 11440510 (+) True AMCG00012137
AMCG00012135 mRNA downstream 21730 11440512 ~ 11445488 (+) True AMCG00012135
AMCG00012142 mRNA downstream 47026 11465808 ~ 11469405 (+) True AMCG00012142
AMCG00012147 mRNA downstream 59110 11477892 ~ 11478122 (+) True AMCG00012147
AMCG00012146 mRNA downstream 74935 11493717 ~ 11509522 (+) True AMCG00012146
TU169087 other upstream 115545 11284750 ~ 11293899 (+) False G134697
TU169090 other upstream 118922 11242229 ~ 11290522 (+) False G134697
TU169086 other upstream 118922 11246682 ~ 11290522 (+) True G134697
TU168966 other upstream 478991 10926606 ~ 10930453 (+) True G134613
TU168610 other upstream 1091626 10303273 ~ 10317818 (+) True G134343
TU169151 other downstream 17597 11436379 ~ 11446163 (+) True G134743
TU169350 other downstream 612115 12030897 ~ 12031490 (+) True G134898
TU169413 other downstream 753756 12172538 ~ 12172802 (+) True G134955
TU169416 other downstream 762279 12181061 ~ 12181320 (+) True G134958
TU169428 other downstream 772773 12191555 ~ 12192408 (+) True G134968

Expression Profile