RNA id: AMCG00012138



Basic Information


Item Value
RNA id AMCG00012138
length 384
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00012138
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11403660 ~ 11405016 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACATCTTGTGTGCACCTGGGAGTGTACAAGCTACAAATACGCAATTCACACGAAAAAAGAATTCCCATGAAGAGGAAGCCCATCGTGCACGAAGAGCATGTGGTTAATCAGACCCTCAAAGGCTATGACATCGCCCTGATGGAGCTCAGCTGGCCGGTGTCCTACACCCGGTACATCAGCCCTGTCACTCTGGCTGAGGCTAATGCTGATGACTTCACCTGGGGCTGGGAGTGCTGGTCTACAGGCTGTGGGAACATCGGACCTCTGGTGTGTAGGGAGGGCAAAGGGCACAAATGGATCCAGGCTGGGATCACCAGCATGGGCTATCACTGTGCGACAACCAAGAGACCTAGCATCAAGACCAAGGCTTCCGCCCCAGGATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169092 lncRNA upstream 101595 11300334 ~ 11302065 (+) True G134698
TU169080 lncRNA upstream 169777 11233681 ~ 11233883 (+) True G134692
TU168992 lncRNA upstream 347976 11049065 ~ 11055684 (+) False AMCG00012112
TU168979 lncRNA upstream 420866 10967276 ~ 10982794 (+) True G134615
TU168978 lncRNA upstream 432572 10967276 ~ 10971088 (+) False G134615
TU169157 lncRNA downstream 98944 11503960 ~ 11504648 (+) True G134749
TU169172 lncRNA downstream 214161 11619177 ~ 11870630 (+) True AMCG00012152
TU169183 lncRNA downstream 306234 11711250 ~ 11766411 (+) True G134766
TU169199 lncRNA downstream 414241 11819257 ~ 11844832 (+) True G134779
TU169323 lncRNA downstream 511328 11916344 ~ 11917737 (+) False G134877
AMCG00012136 mRNA upstream 14898 11386573 ~ 11388762 (+) True AMCG00012136
AMCG00012128 mRNA upstream 21072 11360239 ~ 11382588 (+) True AMCG00012128
AMCG00012140 mRNA upstream 22888 11380073 ~ 11380772 (+) True AMCG00012140
AMCG00012127 mRNA upstream 91616 11302454 ~ 11312044 (+) True AMCG00012127
AMCG00012122 mRNA upstream 155008 11247182 ~ 11248652 (+) True AMCG00012122
AMCG00012134 mRNA downstream 4428 11409444 ~ 11418782 (+) True AMCG00012134
AMCG00012137 mRNA downstream 31501 11436517 ~ 11440510 (+) True AMCG00012137
AMCG00012135 mRNA downstream 35496 11440512 ~ 11445488 (+) True AMCG00012135
AMCG00012142 mRNA downstream 60792 11465808 ~ 11469405 (+) True AMCG00012142
AMCG00012147 mRNA downstream 72876 11477892 ~ 11478122 (+) True AMCG00012147
TU169087 other upstream 109761 11284750 ~ 11293899 (+) False G134697
TU169090 other upstream 113138 11242229 ~ 11290522 (+) False G134697
TU169086 other upstream 113138 11246682 ~ 11290522 (+) True G134697
TU168966 other upstream 473207 10926606 ~ 10930453 (+) True G134613
TU168610 other upstream 1085842 10303273 ~ 10317818 (+) True G134343
TU169151 other downstream 31363 11436379 ~ 11446163 (+) True G134743
TU169350 other downstream 625881 12030897 ~ 12031490 (+) True G134898
TU169413 other downstream 767522 12172538 ~ 12172802 (+) True G134955
TU169416 other downstream 776045 12181061 ~ 12181320 (+) True G134958
TU169428 other downstream 786539 12191555 ~ 12192408 (+) True G134968

Expression Profile