RNA id: AMCG00012139


Basic Information

Item Value
RNA id AMCG00012139
length 681
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00012139
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11382279 ~ 11388734 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCGGAAGCTGGAGACCCGGGTGAAGACCCCTGGGAATTCAGGGTTTGCACAGCCGTACCCCATACTGCCTAGGGAGTTCACCAAGATGTCTATGTTTGACAAGTTCCTGCAGGACAAGGTGGGCTCCACCTTGCCCCTTATCACCAAGAACTCAGGGAATGCCGCCCACCACTCCGCCTCTGtgtTCAGCAGTCCTCTGTCCAGGAGCTCTATAATCGGTGGTCAAGATGCAAAGAAGGGACAGTGGCCCTGGCAGGTCTTTCTCCAGATCAGTCTGAAGACTGAGCCTACAAAAGCTCGGAGATGTGGAGGCTCCCTGATCAGTGAGCACTGGGTTCTCACGGCAGCGCACTGCTTTGACAGTCCCTATAAGCTGGATAATGCTACGGTGATTCTGGGAGTGTCCAAGCTGAAAGACCCCAATCTACACACACGGACCATGAAGAAGTTCATCAGACATGAGAAATATGTGATTAACAAAAGCGAGAAGGGCCACGACATCGCCCTGGTGGAGCTCAGCGAGCCAGTGTACTTCACCCAGTACATCCAGCCAGTCTCTCTGCCCGAGGCTGCGGCTGATGACTTTACTTCGCACTGGCAGTGCTGGGCTACAGGCTGGGGGGAAATCAAAGAGAACGGTAGGAGCAAAGCTGAAATACTCAGATTGATCCAGTGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169223 lncRNA downstream 34469 11330466 ~ 11347810 (-) False G134803
TU169027 lncRNA downstream 399488 10967276 ~ 10982791 (-) True G134648
TU169026 lncRNA downstream 411191 10967276 ~ 10971088 (-) False G134648
TU168688 lncRNA downstream 1034554 10345062 ~ 10347725 (-) True G134402
TU168754 lncRNA downstream 1076252 10303569 ~ 10306027 (-) True G134451
TU169245 lncRNA upstream 7226 11395960 ~ 11400701 (-) True G134819
TU169240 lncRNA upstream 107941 11496675 ~ 11769509 (-) True G134817
TU169274 lncRNA upstream 171363 11560097 ~ 11795338 (-) True G134840
TU169280 lncRNA upstream 214789 11603523 ~ 11604157 (-) True G134844
TU169288 lncRNA upstream 270987 11659721 ~ 11660305 (-) True G134849
AMCG00012132 mRNA downstream 31342 11347488 ~ 11350937 (-) True AMCG00012132
AMCG00012129 mRNA downstream 50998 11322207 ~ 11331281 (-) True AMCG00012129
AMCG00012130 mRNA downstream 62531 11312924 ~ 11319748 (-) True AMCG00012130
AMCG00012133 mRNA downstream 81458 11298027 ~ 11300821 (-) True AMCG00012133
AMCG00012131 mRNA downstream 85176 11284737 ~ 11297103 (-) True AMCG00012131
AMCG00012141 mRNA upstream 147292 11536026 ~ 11540090 (-) True AMCG00012141
AMCG00012149 mRNA upstream 267342 11656076 ~ 11657132 (-) True AMCG00012149
AMCG00012154 mRNA upstream 387707 11776441 ~ 11789617 (-) True AMCG00012154
AMCG00012157 mRNA upstream 419265 11807999 ~ 11813611 (-) True AMCG00012157
AMCG00012156 mRNA upstream 454334 11843068 ~ 11866778 (-) True AMCG00012156
TU169020 other downstream 420408 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 570398 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 1126241 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 1131164 10250271 ~ 10251115 (-) True G134445
TU168677 other downstream 1137355 10244421 ~ 10244924 (-) True G134397
TU169384 other upstream 685270 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 730546 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 802821 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 814028 12202762 ~ 12213799 (-) False AMCG00012174
TU169444 other upstream 832471 12221205 ~ 12223185 (-) True G134981

Expression Profile