RNA id: AMCG00012141


Basic Information

Item Value
RNA id AMCG00012141
length 1463
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00012141
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11536026 ~ 11540090 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGTCAACCAGCCACAGGTTACAATGAAAGCAGAATTCTCCCAGCAGAATGTCCCCATAGGGGAACAGAAGTGGAATCCAGAAACCAAGAGGGTCAAGATGCTTTTCTTGCAGCTGCTGTTCTGTGTCCTGCTCCTGATCACTCCTGAAGtaTCCAGCAGTCCTCAGTTCAGGAGCTTCATCGTGGGGGGACATGACGCGACAAAAGGAAAGTGGCCCTGGATGGCCTATCTCAAGGTCTTTGTGAAAAAAGCTGATAATTCCGAATGGTTGACTATGTGTGGCGGCTCCCTGATCAGCGCCCAGTGGGTTCTTACTGCAGCGCACTGCTTTGATGGAACTTTTAATCAGCACAAATCCAGGGTGCTCCTGGGGGAGATCAGCTTGACcggaaaacaacacaaaatgatcAAGATACAAAAAGTCATCAAGCATGAGAAGTACCGCCACTATGATGCAGGAAATGACATCGCCTTGGTGCTGCTGAGTGAAAAACAGTCCTTGAATGCAGTGATCAGACCAGTCGATCTGTCCCGGGGAAATGAGGATTTCTCCAACAGGGGGGAGTGCTGGATCACCGGCTGGGGCTTAACGGAAGACAATAAATCTCTCCCAAAATCCAAGATTCTACAGCAAGTCAAGGTTCCTGTTTTTACAGGCGATCAATGCAGGAAATACTGGGACTCTGTGCCAGCTCACACACTCTGTGCTGGGACAGAGAAACAGGGCGCCTGTGTGgGGGATAGTGGAGGTCCTCTGGTCTGTATTGTGAATGACCGTTGGGTCCAGGCTGGTATTGTGAGTTATGGACCTGAAGGCTGCAGGATTCCCTTGAAGCCCACAGTGTTCACTCAGGTCTCCAACTTCCTGCCCTGGATAAAAAATCACACCAACATGCACAATTTCTACTGAGGTGTACAGATTGCACCCCTCTTGACTCCCCAGCTCAATGCACAGCAAATACAGAGAgggacacaaaacacaacatatatGACCAGTTTCTATATGACCAGTCAtgcatatacacaaacatatacatatcaaCATGTAAACAGACTTGATGTTCTGTTCCAttatcccctctctctcactgtctctttTAATGAAAGAAAGTTTCAGATTAGAGAAAATATGGGGTGCCAAATGTAAATCAAAGCACACAAATGTTAAAtctctgttttgaaaaataaatatttgccgTTAGACAACatatttagctaaatcctaaatatgggctttgcaaattaaacatttaactttgaaataaatatttaactttaatcTGAATTATCTGAgtcacaaattacatatttaggttttaaataaatctttagtttcaatataaatgttaaatctaaatctaaatgttaaatataaatgttggcTCTGCTCTGCTATGAGAGATCAGTTGAACTGTGACTGTGGCTTAACAGGCTCAATAAAACCACAGAGCATTCAAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169245 lncRNA downstream 135325 11395960 ~ 11400701 (-) True G134819
TU169223 lncRNA downstream 188216 11330466 ~ 11347810 (-) False G134803
TU169027 lncRNA downstream 553235 10967276 ~ 10982791 (-) True G134648
TU169026 lncRNA downstream 564938 10967276 ~ 10971088 (-) False G134648
TU168688 lncRNA downstream 1188301 10345062 ~ 10347725 (-) True G134402
TU169274 lncRNA upstream 20007 11560097 ~ 11795338 (-) True G134840
TU169280 lncRNA upstream 63433 11603523 ~ 11604157 (-) True G134844
TU169288 lncRNA upstream 119631 11659721 ~ 11660305 (-) True G134849
TU169296 lncRNA upstream 204804 11744894 ~ 11767954 (-) True G134855
TU169293 lncRNA upstream 225982 11766072 ~ 11766416 (-) True G134853
AMCG00012139 mRNA downstream 147292 11382279 ~ 11388734 (-) True AMCG00012139
AMCG00012132 mRNA downstream 185089 11347488 ~ 11350937 (-) True AMCG00012132
AMCG00012129 mRNA downstream 204745 11322207 ~ 11331281 (-) True AMCG00012129
AMCG00012130 mRNA downstream 216278 11312924 ~ 11319748 (-) True AMCG00012130
AMCG00012133 mRNA downstream 235205 11298027 ~ 11300821 (-) True AMCG00012133
AMCG00012149 mRNA upstream 115986 11656076 ~ 11657132 (-) True AMCG00012149
AMCG00012154 mRNA upstream 236351 11776441 ~ 11789617 (-) True AMCG00012154
AMCG00012157 mRNA upstream 267909 11807999 ~ 11813611 (-) True AMCG00012157
AMCG00012156 mRNA upstream 302978 11843068 ~ 11866778 (-) True AMCG00012156
AMCG00012158 mRNA upstream 331147 11871237 ~ 11885827 (-) True AMCG00012158
TU169224 other downstream 149047 11330466 ~ 11386979 (-) True G134803
TU169020 other downstream 574155 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 724145 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 1279988 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 1284911 10250271 ~ 10251115 (-) True G134445
TU169384 other upstream 533914 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 579190 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 651465 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 662672 12202762 ~ 12213799 (-) False AMCG00012174
TU169444 other upstream 681115 12221205 ~ 12223185 (-) True G134981

Expression Profile