RNA id: TU169172


Basic Information

Item Value
RNA id TU169172
length 1423
lncRNA type read_through
GC content 0.48
exon number 4
gene id AMCG00012152
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11619177 ~ 11870630 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATATAAAGCGTGTTGTCTCCAGTGAGGTCCAGTAGAGTGGGGGAGAGTCAGTGTTCTGTGTCCAGTGAGCTGCAGTAGTTGTTGAGAGTCAGTGCTCAGTGTCCAGTGAGCTGCAGTAGTTGTTGAGAGTCAGTGCTCAGTGTCCAGTGAGAATCCAGGAGGATCAAGATGCTTCTCCTGCAGCTGCTTTTTTGGGTCCTGCTCCTGAACACCTACAAAGTGTCCAGTCATCCTCATCTTCATCCTCGTCCTCATCTGCATCTCCATCCTCATCCCAGGAGCTCCATAGTAGGGGGTCAGGATGCCAAGGAGGGACAGTGGCCCTGGCAGGTGTATCTGCAGCTTAGTCTGATGCAAGGTTTCTCAATCAGTTGTGGTGGCTCCCTGATCAGTGATCGTTGGGTTCTCACTGCAGCGCACTGTGTGGATTCCGCTTTAAAAAAGGGAATGTAAGGcagtttatttataaagtaatgataataataataataataatagtacagtGGTCTCTCAATATTCACACCCCAGCTGTATGTATACAATGGCTCCAGTAAGCAGGTGTGAAGCGGAGCCACTGCATGAATATACAaacgcacatacacacaaaacacactctctcacacacacaaacacacagcgtCACTGCAGGCACCACACAAAAGGGAGGGATTTAAAAACGGTGCGCAAGTAAAAATTAAAACCCAAAGAAGAAAAGCTCAACAGAGGAAGTCAGTAGATGAGACGGGACTGTCTGGAGATGCCGTGTGCGATTGTGCGCGATTAAATCAGTATTTGGGGACCCAGTTTGTGGGCCCAGCTTAAAACTTAATTATCTGCCTCAACATCTAGCAGCGGTTCATTCCTGCCGAGGCGAAGGATTATAaactgaggatttttttttagttttttgtatattttttttagtttttgtttgttttttaaagtggtttgttttgtttttgtcatttcgGCCCAAGTTTCAATACAGGAAACGGGCTTATTAAATCggatataaaaatgaaaaaatacgaCGCGAGTGAACAGGGTGGGGGTTATATTGAGGAATGCAACGTGGAGCTGTATGCAGGGGGGGTTGTTGGAGTGGAGCAGGAGGTTCTGGCAGtacttggggtgggggggggtgtctgAGCTGTACTGTGTGGGGTACAGTGTGAGTCTTGTCTCGTCTTGTCTGTGAAGACGGGGGCGGGGGGCGTTCCGTGTGCGCGGGGGTCGGGTCCGGCTGCTCTAGTTGAGAGTGCCTCGGCAGTTCTCGGTCCCGCACAAACAGGGGATTTTGTTCTCCTCGATGGGGAACTTGTAGTCGTAGGTGATCTCCTCATTCACGCCGATGGGCTGCTTGGAGTAGATCACGATCTTCTTCTGCGACTCCAGCGTGATGACCTTGGCATAGCAGTtgggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169157 lncRNA upstream 114529 11503960 ~ 11504648 (+) True G134749
TU169092 lncRNA upstream 317112 11300334 ~ 11302065 (+) True G134698
TU169080 lncRNA upstream 385294 11233681 ~ 11233883 (+) True G134692
TU168992 lncRNA upstream 563493 11049065 ~ 11055684 (+) False AMCG00012112
TU168979 lncRNA upstream 636383 10967276 ~ 10982794 (+) True G134615
TU169323 lncRNA downstream 45714 11916344 ~ 11917737 (+) False G134877
TU169322 lncRNA downstream 45724 11916354 ~ 11917737 (+) False G134877
TU169324 lncRNA downstream 45724 11916354 ~ 11918265 (+) True G134877
TU169327 lncRNA downstream 53638 11924268 ~ 11926131 (+) True G134879
TU169378 lncRNA downstream 248601 12119231 ~ 12119660 (+) True G134923
AMCG00012145 mRNA upstream 85381 11526885 ~ 11533796 (+) True AMCG00012145
AMCG00012146 mRNA upstream 109655 11493717 ~ 11509522 (+) True AMCG00012146
AMCG00012147 mRNA upstream 141055 11477892 ~ 11478122 (+) True AMCG00012147
AMCG00012142 mRNA upstream 149772 11465808 ~ 11469405 (+) True AMCG00012142
AMCG00012135 mRNA upstream 173689 11440512 ~ 11445488 (+) True AMCG00012135
AMCG00012159 mRNA downstream 30917 11901547 ~ 11913954 (+) True AMCG00012159
AMCG00012162 mRNA downstream 120885 11991515 ~ 12028909 (+) True AMCG00012162
AMCG00012161 mRNA downstream 162717 12033347 ~ 12036522 (+) True AMCG00012161
AMCG00012167 mRNA downstream 214728 12085358 ~ 12095939 (+) True AMCG00012167
AMCG00012168 mRNA downstream 261617 12132247 ~ 12141475 (+) True AMCG00012168
TU169151 other upstream 173014 11436379 ~ 11446163 (+) True G134743
TU169087 other upstream 325278 11284750 ~ 11293899 (+) False G134697
TU169090 other upstream 328655 11242229 ~ 11290522 (+) False G134697
TU169086 other upstream 328655 11246682 ~ 11290522 (+) True G134697
TU168966 other upstream 688724 10926606 ~ 10930453 (+) True G134613
TU169350 other downstream 160267 12030897 ~ 12031490 (+) True G134898
TU169413 other downstream 301908 12172538 ~ 12172802 (+) True G134955
TU169416 other downstream 310431 12181061 ~ 12181320 (+) True G134958
TU169428 other downstream 320925 12191555 ~ 12192408 (+) True G134968
TU169500 other downstream 695582 12566212 ~ 12716115 (+) False G135026

Expression Profile