RNA id: AMCG00012154


Basic Information

Item Value
RNA id AMCG00012154
length 657
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00012154
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11776441 ~ 11789617 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATATCGGTTTCTCAGGCTTGTCCAATAACAGTGGTGTGTCCAGCCATCCACATCTTCGTCCTCATCCTCGTCCACATCTTCGTCCTCACCCCAGGAGCTCCATAGTGGGGGGTGAGGATGCTAAGGAGGGACAGTGGCTCTGGCAGGTGTATCTGAAAATTACTCTGAAGAACGGATATATCAGTTGTGGCGGCTCCCTGATCAGTGACCACTGGGTTCTCACTGCAGCACACTGTGTGGACTTCCATTATAAATGGTGGGAATCTGAGGTGGTCCTTGGGGCGCATTCCCTGGATGAACCCAGTGAGCATGAAGTGAGACGCACCATGAATAAGGTCATCAAGCATGAGGAATATGTGGGCGGCAAAACAGGCTTCGACATCGCGCTGATAGAGCTCAATGCCACAGTGTCCAGcaacaattacattaaaccCGTGACCCTGCCTGGGCCTGAAGACAAATACACCAAGGCCTGGGAGTGCTGGGCTACAGGCTGGGGGAATATCATGGAGGGTGGTAGGAAGACTGGGCAGCCCTGGGTCCTGGCCGGGGTCACCCGATTCGGGGATGGCTGTGGTAAAGAAGACTCTCCAGGGGTCTACACCCAGGTGTCCAGCTATCGAAACTGGATCAAGAAGCACAGTGGTGTCTGA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169240 lncRNA downstream 6932 11496675 ~ 11769509 (-) True G134817
TU169296 lncRNA downstream 8487 11744894 ~ 11767954 (-) True G134855
TU169293 lncRNA downstream 10025 11766072 ~ 11766416 (-) True G134853
TU169288 lncRNA downstream 116136 11659721 ~ 11660305 (-) True G134849
TU169280 lncRNA downstream 172284 11603523 ~ 11604157 (-) True G134844
TU169351 lncRNA upstream 224735 12014352 ~ 12017558 (-) True G134899
TU169392 lncRNA upstream 328723 12118340 ~ 12118592 (-) True G134936
TU169465 lncRNA upstream 476986 12266603 ~ 12266826 (-) True G135002
TU169471 lncRNA upstream 572918 12362535 ~ 12362840 (-) True G135008
TU169716 lncRNA upstream 777056 12566673 ~ 12589807 (-) True G135148
AMCG00012149 mRNA downstream 119309 11656076 ~ 11657132 (-) True AMCG00012149
AMCG00012141 mRNA downstream 236351 11536026 ~ 11540090 (-) True AMCG00012141
AMCG00012139 mRNA downstream 387707 11382279 ~ 11388734 (-) True AMCG00012139
AMCG00012132 mRNA downstream 425504 11347488 ~ 11350937 (-) True AMCG00012132
AMCG00012129 mRNA downstream 445160 11322207 ~ 11331281 (-) True AMCG00012129
AMCG00012157 mRNA upstream 18382 11807999 ~ 11813611 (-) True AMCG00012157
AMCG00012156 mRNA upstream 53451 11843068 ~ 11866778 (-) True AMCG00012156
AMCG00012158 mRNA upstream 81620 11871237 ~ 11885827 (-) True AMCG00012158
AMCG00012160 mRNA upstream 100734 11890351 ~ 11896617 (-) True AMCG00012160
AMCG00012164 mRNA upstream 134704 11924321 ~ 11964818 (-) True AMCG00012164
TU169224 other downstream 389462 11330466 ~ 11386979 (-) True G134803
TU169020 other downstream 814570 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 964560 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 1520403 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 1525326 10250271 ~ 10251115 (-) True G134445
TU169384 other upstream 284387 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 329663 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 401938 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 413145 12202762 ~ 12213799 (-) False AMCG00012174
TU169444 other upstream 431588 12221205 ~ 12223185 (-) True G134981

Expression Profile