RNA id: AMCG00012156


Basic Information

Item Value
RNA id AMCG00012156
length 3698
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00012156
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11843068 ~ 11866778 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACCATCCAGTGTGGGCCTAAGCGTGGCACACCTGACCACTTGCTTTGCGTAAAAAAGGGCCCGCAGTCTCCACACGTTGTCCACTGAGAGAAACGCGGTGGGGGTGTTCAAAACATGTATAAGTGATGACCCAGTTTGCGGTCTCCACAACAGCTCCGATATGATCTAATCAAGGGCAGTGCGCAGACTCGGAGAGAGCCTCTTGCTCTGTAATGAGAGCAGCGTTTCCCAACACAGGTTGCTTCATCCTCCGCTGTCTTATGATCCGCTCCTTCGGCGCATCGCACACTTCTTTTTCGGGGGTCTGGATCTGGTCATCGGCGTGAACACACGGCACCATGCTGGCTCCCGCACCTCGTATCGGTCCTGCTGGGGTTAACACCTGAATCTCTCCCTCGCCTTGCCTGTGCTGGGATGCAAAAAGACAGaTGAACGCAATTGCCAGCCATGCAGTGTGGCTCCGTCCGTCGCTGGCTCAGAGAGATCGGGGGTAATTGGACGTCCGCTGACGGCAACACGGGTGGACAGGTAGACCGAGGACAGACAGACGAGGCTCATCTCTTCTGTGTCGTCCCGGATCGGCTGATCGGACACCTCGACACGCTTGCACGCAGCGAGGCAATAACTAAGCCAGAGCAAAcggaaagggaaagggaaagggaaaggaaaagaCGAGCAGCAGAGCCAAGCACTACTGCGACCATGGCGAGCGAGCCGGGGCTGGTGTACTTGCTGACCGGGGGCTGCGGGTTCCTGGGGCAGCATCTTGCTCGGATGCTGGTGGAGAAGGAGGACTCGGTGTCGGAGATCCGGCTCTTTGACCTGCACCTGGACCACAGTCTGGAGAAGCTGGGCACCGACCGAGTGAAGGTGAGGCTGCTGCAGGGTGACATCACCGACTACGCCAGCGTGCGGGAGGCGGTGCGGGGTGCCCAGCTGGTCATCCACTCTGCCAGCCTGGTGGATGTGTGGCACCGCGTCCCCGAGCAGACCATCCGTGCCGTCAACGTGCAGGGTACATTCAATGTGCTGCAGGCCTGTGAGGAGGAGGGCGTGCAGTACCTGGTCTACACCAGCAGCATGGAGGTGGTGGGGCCAAACGTCAAGGGAGACCCCTTCTACAGaGGAAATGAAGACACCAAGTACAACATCTATCATGACATGCCCTATCCGAAGAGCAaagcagaggcagagagactGGTGATCGATGCCAATGGGATGCAGGTGAAGGGTGGTCGGACGCTGTACACCTGTGCCCTGCGGCCCACGGGCATCTACGGCGAGAACCACCAGCTGATGCGGGACTTCTACAACATGGGGGTGCGCACGGGCGGCTGGCTGATACGCGGTGTCCCCGAGAGCACAGAACATGGCCGCGTCTATGCAGGTAATGTAGCATGGATGCACGTGCTGGCCGCCCGGGCCCTGCGCGAACGCCCCCTCAAGCTGGCGGGCGAGGTCTACTTCTGCTACGACGACTCGCCCTACCAGAGCTACGAGGCCTTCAACATGAACTTCCTCTCCGGCTTCGGCTTCCGGCAGGTGCGCATGCCCCACTGGCTGCTGAGGGGGCTGGCGGCCTTCAACGACTTCCTGCACACTGTCCTGCGCCCCCTGTGCAACTACACCCCCCTGCTGAACCGCTACACCCTGGCCGTGGCCTGCACTTCCTTCACCGTGGACACGGACAAGGCCGAGAGACACTTCGGGTACCAGCCGCTCTACTCCTGGGACGAGTGCCGCCGCCGCACCCTGGCCTGGGTGGAGACCTTCCCCCGGCTGGGAGAGAGCAGTAGCGTGAAGCAGGAGTGAAGGGTGGGAGGTTGGGAGGGGACAGAGTGAGGGATGTGACAGAGGGAAAGTGGGCGAGGAGGATGTGGATTGAGGTGAGGGATGATGGAGGGTGGGTGAGGGGAGATGGGAGGATGGACAAGGTTGGAGGAGGacgagagagagaatgaaaagtAAGTAATAAAGTAAACAGTGCAATAgaatagggagagagagagagagagaaagtgggacccctctctctttctctctcagacaAACAGCATTAGCATAACCTATTAGCATATATGGCTTCGACTCTGGCACCAGGTGAAGGATTGAAGCTTGCTTTCAGTTAAGTTtccgttattattattatcgtttaCAGTCATCCTGTACGAAATGCTCTTCTGTCTAATATAGTTGTGTACACGTGCAGTGCATTAATGATGTGACCAACTTAATACAGATATATTCTCAAGTCTTCCACAGTGTGCCTGGTTGCAAAGGTGCTAGAAGCAGAGGTATAGAAAATAAGAGTTGCTCTCAATTGAATCGTCTTGTAATTTGCCGCACCAAAGAAATCTGAAGTGTTGTCTTATGTTTTTGTTAGAAACCTGAGAAAGACCAAGCCTAAAGCAAtctataaaactattttttctgtttacttttGGTTTTTGAAGATAGCTAAGTCCCCTCACATGAGCAGTGTGCTGTGCTTGCTTCTAATCGTTCCAACCCCCCCTCCAAAGTCTTGAGAAAACTGGTGCAATTACAGATATGCCACTAACTATACAGCACCAAAGCTGTGCAAACTCTCTCCTTCCTATCACAGAACAGAGGGCTCTACACATGCAGTGGCAAATCTACAGTGCTGTGTAAACCTTTCTGCCCATATGAAAACGTGTGGTGTTTTATCTTCCTGGCCCAACCCCAGGCATTTCATCTTTGCAATTTGAATGCAAGACATAAGACCAAAagcatcaacaacaaaaataaaacactataaaaGAAACTTTTGTAGAACACCTGTGTGATCAACTTCTAGCAGGGACAAGAGAACCCAATTagattgtactgcactgtttgtttgttcctctAACCATCTATCAAACatgaactgaaaaacaacagtcCTACTACTATATACTCTCCTATACCACACTGTTATGCACTGTGAACAACTAGTCTTTTGCCCATATAAGTCGACCCCCATATCCGTAACTGCAGTCGGCCGCATTGGTGTGAGATGTATTCagattgcagtgtttttaaaactggTCCCTGTTTGGTCAGATTGCTATTTATGATTCTTGTAAACAGCATTTCGTAACCCCACAGCTATGTTTGCTTAACAACATGTGTTCATAAttggtcttttttattttttttattttaaacttcccTTCTGCCCCTTTGTGGCAGTTGGGACTGGATGCACCGCTATAGTGCAAGGTCCTCACTTTTGCTTGCCAGTTTAGCGGGAAAGCCAGGCAAGCTCAACAGTCTGTCAGTGAGTCCGTTAAGTGCTTAGTCAGACCGTGTACCAGCCTTTTAAAGCGATGTTTACAGGCTGATTTGTTGTATCCGTGGGAGCCAGTCTTTAGATTATAGTCTGAGAGAGACAGTTTAGTGAGATATCTGTTCTAATGCCTGTTTCTGACTAAAGCCACAGATCTTTCCTGGACCAGAAGATCAAATTCCTGCACCAGACAAGCAGGACAACTTTGTCAcaaagggacacacacacaaaatagtgtCAGTTTTCCCATTCTTGGTTCCCCTCCCCTCCGTTCAGCAATATTGATAAAATCTAGATTTTAGATTTGTactaaaaattatatttaatcttaatatataaatatatgtctatgttttataaaaaaatatatatgtataaatacaaataaaaaatgtttaatcttc

Function

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016853 isomerase activity molecular_function
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity molecular_function

KEGG:

id description
K12408 HSD3B7; cholest-5-ene-3beta,7alpha-diol 3beta-dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169274 lncRNA downstream 47730 11560097 ~ 11795338 (-) True G134840
TU169240 lncRNA downstream 73559 11496675 ~ 11769509 (-) True G134817
TU169296 lncRNA downstream 75114 11744894 ~ 11767954 (-) True G134855
TU169293 lncRNA downstream 76652 11766072 ~ 11766416 (-) True G134853
TU169288 lncRNA downstream 182763 11659721 ~ 11660305 (-) True G134849
TU169351 lncRNA upstream 147574 12014352 ~ 12017558 (-) True G134899
TU169392 lncRNA upstream 251562 12118340 ~ 12118592 (-) True G134936
TU169465 lncRNA upstream 399825 12266603 ~ 12266826 (-) True G135002
TU169471 lncRNA upstream 495757 12362535 ~ 12362840 (-) True G135008
TU169716 lncRNA upstream 699895 12566673 ~ 12589807 (-) True G135148
AMCG00012157 mRNA downstream 29457 11807999 ~ 11813611 (-) True AMCG00012157
AMCG00012154 mRNA downstream 53451 11776441 ~ 11789617 (-) True AMCG00012154
AMCG00012149 mRNA downstream 185936 11656076 ~ 11657132 (-) True AMCG00012149
AMCG00012141 mRNA downstream 302978 11536026 ~ 11540090 (-) True AMCG00012141
AMCG00012139 mRNA downstream 454334 11382279 ~ 11388734 (-) True AMCG00012139
AMCG00012158 mRNA upstream 4459 11871237 ~ 11885827 (-) True AMCG00012158
AMCG00012160 mRNA upstream 23573 11890351 ~ 11896617 (-) True AMCG00012160
AMCG00012164 mRNA upstream 57543 11924321 ~ 11964818 (-) True AMCG00012164
AMCG00012163 mRNA upstream 163290 12030068 ~ 12032137 (-) True AMCG00012163
AMCG00012165 mRNA upstream 171447 12038225 ~ 12042088 (-) True AMCG00012165
TU169224 other downstream 456089 11330466 ~ 11386979 (-) True G134803
TU169020 other downstream 881197 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 1031187 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 1587030 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 1591953 10250271 ~ 10251115 (-) True G134445
TU169384 other upstream 207226 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 252502 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 324777 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 335984 12202762 ~ 12213799 (-) False AMCG00012174
TU169444 other upstream 354427 12221205 ~ 12223185 (-) True G134981

Expression Profile