RNA id: AMCG00012157


Basic Information

Item Value
RNA id AMCG00012157
length 1744
RNA type mRNA
GC content 0.64
exon number 9
gene id AMCG00012157
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11807999 ~ 11813611 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccccgccccaaTCCCCCAGATGCAGGAGCCTCCCCCCACTGCCTTCGGGGGGCAGCCCCACTTGTCTGCGTCCGTGTCACTCCTCCCGGGGGTACGGCGCCCCCCTCCTGCCCTGGACTCCCTCAGCTACCTGGAGTCGGCCAGCCTGATGTCTGGCACACTGGAGTCCCTGGCCGGACTGGGCGATGACGCCAGCTCGCTGGGCTCCGACTCCGAGGTGAACGGCCTCGCCTACCGGCGCACCGACAAGTACGGCTTCCTGGGAGGCTCGCAGTTCGGCGAAACTGGGGAGCGGGAGCTGAAAGTCGAAGTAGCTCGGCAGAGGGAGCTCAAGTGGCTGGACATGTTCAACAACTGGGACAAGTGGGTCTTCCGGCGCTTCCAGAAGGTGAAGCTGCGCTGCAGGAAGGGGATCCCCTCGTCTCTGAGGGCCAAGGCCTGGCAACTGCTCTCCAACAGCAAGGAGCTCATGGAGCAGAATCAAGAGAAATTCGAAgcTTTAGAGAGGGAGCCGGGGGATCCCAAGTGGCTGGACATCATAGAGAAGGATCTTCACAGACAGTTTCCCTTCCATGAGATGTTTGCGGCTCGGGGGGGTCACGGTCAGCAGGACCTGTATCGCATCCTGAAGGCCTACACCGTGTACCGGCCTGAGGAAGGCTACTGCCAGGCCCAGGCCCCCGTTGCGGCCGTGCTGCTCATGCACATGCCTGCAGAGcaagCATTCTGGTGTCTGGTTCAGATCTGTGAGAAGTATCTGCCCGGCTACTACAGCGCTGGACTGGAGGCGATCCAGCTGGATGGAGAGATCTTCTTCTCGCTGCTGCGGAGGGTGTGCCCCATGGCCTACAGGCACCTGAAGAAGTTCAAGATCGACCCCATCCTGTACATGACCGAGTGGTTCATGTGTGTGTTCTCGCGTACGCTGCCCTGGGCCTGTGTCCTCCGCGTGTGGGACATGTTCTTTTGCGAGggtGTGAAGATCGTTTTCCGTGTGGGGCTGGTGCTGCTGCGACAGACGCTGGGCTCGGTGCGTCGCTGGCGGGAGTCCCGGGGGGAGCTGCAGCACCAGCCCTGCCGGCGCCTCCACGGCACCCGGGCCATCCTGGAGCAGGCCCGCGGCGGCCCGCCCCCCGGCCCCCTGCGCGCCTCCGCCAGCCTGCTCAGCCTCCCGGGCTTCCGCCGCACCAGGGAGAACAGCAACCCCTTCCTGTCCCAGCTGGCCCCCGCCACGCCCCGCTTGCCCCCCAAGGCGACCCAGAGCCCCAAAATTGTGTCGGAGGCTGTGGTCCCCTCCCTGCCCTCGCCCACTGCCAATAACACTCCCCTCCCTGCGGCCACCCCTTCCACCCCCAGCCCCactggaggaggggaggaggatgggggcaagaagaagaaaaagaagagcaaggaggagaagaagagcaaggaggagaagaagagcaaggaggagaagaagcgcgagaaggaggaggagaagcagAGGGCCCGCGAGCTCAAGGACCTGGAGAAGGCCGAGAAGGCTGAGAAGGAGAAGcagaagaaagagagggagcgggccgagaaggagaagaagaagggaGGTGTGGGGAAGAAGAAAGACAAGGAGAAAGTGGGGGGAGAGAACGGGGGAACGCCGGTGGTGAcggtgggaggaggaggaggaggaggaggagcggggGTGGTGGGAGGGCAGACGGAGGACGAGAATGGTGCACCAGCCCCCAAGGATACATACTtctga

Function

GO: NA

KEGG:

id description
K19944 TBC1D10; TBC1 domain family member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169274 lncRNA downstream 12661 11560097 ~ 11795338 (-) True G134840
TU169240 lncRNA downstream 38490 11496675 ~ 11769509 (-) True G134817
TU169296 lncRNA downstream 40045 11744894 ~ 11767954 (-) True G134855
TU169293 lncRNA downstream 41583 11766072 ~ 11766416 (-) True G134853
TU169288 lncRNA downstream 147694 11659721 ~ 11660305 (-) True G134849
TU169351 lncRNA upstream 200741 12014352 ~ 12017558 (-) True G134899
TU169392 lncRNA upstream 304729 12118340 ~ 12118592 (-) True G134936
TU169465 lncRNA upstream 452992 12266603 ~ 12266826 (-) True G135002
TU169471 lncRNA upstream 548924 12362535 ~ 12362840 (-) True G135008
TU169716 lncRNA upstream 753062 12566673 ~ 12589807 (-) True G135148
AMCG00012154 mRNA downstream 18382 11776441 ~ 11789617 (-) True AMCG00012154
AMCG00012149 mRNA downstream 150867 11656076 ~ 11657132 (-) True AMCG00012149
AMCG00012141 mRNA downstream 267909 11536026 ~ 11540090 (-) True AMCG00012141
AMCG00012139 mRNA downstream 419265 11382279 ~ 11388734 (-) True AMCG00012139
AMCG00012132 mRNA downstream 457062 11347488 ~ 11350937 (-) True AMCG00012132
AMCG00012156 mRNA upstream 29457 11843068 ~ 11866778 (-) True AMCG00012156
AMCG00012158 mRNA upstream 57626 11871237 ~ 11885827 (-) True AMCG00012158
AMCG00012160 mRNA upstream 76740 11890351 ~ 11896617 (-) True AMCG00012160
AMCG00012164 mRNA upstream 110710 11924321 ~ 11964818 (-) True AMCG00012164
AMCG00012163 mRNA upstream 216457 12030068 ~ 12032137 (-) True AMCG00012163
TU169224 other downstream 421020 11330466 ~ 11386979 (-) True G134803
TU169020 other downstream 846128 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 996118 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 1551961 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 1556884 10250271 ~ 10251115 (-) True G134445
TU169384 other upstream 260393 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 305669 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 377944 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 389151 12202762 ~ 12213799 (-) False AMCG00012174
TU169444 other upstream 407594 12221205 ~ 12223185 (-) True G134981

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000069_04113962_04124908.mRNA True 3685 mRNA 0.48 11 CI01000069 4113081 ~ 4125207 (+)