RNA id: AMCG00012162


Basic Information

Item Value
RNA id AMCG00012162
length 1620
RNA type mRNA
GC content 0.53
exon number 12
gene id AMCG00012162
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11991515 ~ 12028909 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aTGCTGTACCAGAACCAAAGACACTATCAACATGCCAAAGAGTTTAAGCTCTCTGAAGTCCTCAGTTGCTTCACTGGTTATTTCACCAAGGAGTTTGGACATCTTGTGCACCTCAGTCTCACCAAACAAGACAAGCTCTTCATGCTTTTGTGGCCAGCTGGGGGCCACACTGGAGCCTGCACTCACAGCTCCACCCTGAGCACTGCAACATTTTTAAGATGTCTGGTTTCAGTAAAGGATAAGGAATATGTGGGATTTGCCACACTTCCCAACCAGGTCCACCGCAAATCGGTCAAGAGGGGCTTCGACTTCACACTCATGGTGGCAGaaCGCATCTCACAGACCATGGAGATCACCAAGAATGCGGTGGACATCGAGGAGAGAGGGGTCAAGGTGAAGCTGACCGTAGTGGACACCCCGGGATTCGGGGACGCCGTAGACAACACAGAGTGCTGGAAGTCCATTGCCGAGTACATCGACCAGCAGTTCGAGCAGTACTTCCGGGACGAAAGCGGGCTCAACCGCAAGAACATCCAGGACAATCGGGTCCACTGTATCCTCTACTTCATCTCCCCCTATGGCCACGGGCTCCGTCCTCTGGATGTGGAGTTCATGAAGGCAATCCACGACAAGGTGAACATCGTGCCAGTCATCGCTAAGGCCGACACCCTGACCCCCTCTGAGGTCAAAACCATGAAGCAGAGGTTCCCGGACTGCGACTCGGACGAAGACGAGGACTTCAAACAGGAGGACACAGCACTCAagGAGAGCATTCCCTTCGCTGTGATTGGCAGCAACGCCGTGATAAGCGACAGCAAAGATCGGCCAATGAGAGGGCGGGTCTACCCCTGGGGCGTGGTCGAGATTGACAACCCCACTCACTGTGACTTCGTCAAGCTGCGCAACATGCTGATCCAGACCCACATGCAGGACCTGAAGGACGTGACCCAGGAGGTGCACTACGAGAACTACCGGGCCCAGTGCATCCAGAGCCTGACCCGCATCGGTGCCAAGGAACGCAGCTCCCGCAATAAAATCTCCCGTCAGAGCATCACCGAGTTGTCGCTGCTGCCCCTGGCCGAGACCGAGAAGCTCATCCGGGAGAAGGACGAGGAGctgcGGAGGATGCAGGAGATGATCCAGAAGATGCAACAGCAGATGCAGCAGAACCAGGGGGAGCAGTCTGACACCCTCTGAGCTCCCAACCAAATCATACCGCTGTACAAAAAACTATAATCAAAGGTTTCTAGAGAAGATCTGGGGTGGCTGTTTTTAACACTGTCCATAGTCTTGAGAGGGACTCAGTCTCTTCTGAAACTGTTCCAAGAGAATGTGGTGTAGCTGTCTATTTATGTAGAGGCTTTTAAACAGCAGGTGTATTGAATGCATATTTCTCCTCCTGCTGTAATTGCATCCTCCCTCCCCAAACCATGAGAATCTGGGGCAGCCTCCTTTTCAAAGAGGGTTCTAACTGGCTGATGCAGGGTGGAGGGGGGGAAGCTGTGCTTAACTCATGTGCTTGAGAGGCTTTAAGAAGAGCCACAGGAGGCTGACTTTCATTGCTGTTTACAGGCTTCTAACCGTGTGAGATGCTGCGCGTTGGCTACTGCAGAGGctcca

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169327 lncRNA upstream 65384 11924268 ~ 11926131 (+) True G134879
TU169324 lncRNA upstream 73250 11916354 ~ 11918265 (+) True G134877
TU169323 lncRNA upstream 73778 11916344 ~ 11917737 (+) False G134877
TU169322 lncRNA upstream 73778 11916354 ~ 11917737 (+) False G134877
TU169172 lncRNA upstream 120885 11619177 ~ 11870630 (+) True AMCG00012152
TU169378 lncRNA downstream 90322 12119231 ~ 12119660 (+) True G134923
TU169399 lncRNA downstream 119158 12148067 ~ 12158458 (+) True G134942
TU169402 lncRNA downstream 130309 12159218 ~ 12159429 (+) True G134944
TU169403 lncRNA downstream 131686 12160595 ~ 12161253 (+) True G134945
TU169404 lncRNA downstream 132549 12161458 ~ 12162298 (+) True G134946
AMCG00012159 mRNA upstream 77561 11901547 ~ 11913954 (+) True AMCG00012159
AMCG00012155 mRNA upstream 188390 11798577 ~ 11803125 (+) True AMCG00012155
AMCG00012152 mRNA upstream 215264 11767779 ~ 11776251 (+) False AMCG00012152
AMCG00012151 mRNA upstream 240891 11738177 ~ 11750624 (+) True AMCG00012151
AMCG00012150 mRNA upstream 266409 11719340 ~ 11725106 (+) True AMCG00012150
AMCG00012161 mRNA downstream 4438 12033347 ~ 12036522 (+) True AMCG00012161
AMCG00012167 mRNA downstream 56449 12085358 ~ 12095939 (+) True AMCG00012167
AMCG00012168 mRNA downstream 103338 12132247 ~ 12141475 (+) True AMCG00012168
AMCG00012172 mRNA downstream 188797 12217706 ~ 12223005 (+) True AMCG00012172
AMCG00012177 mRNA downstream 197405 12226314 ~ 12238811 (+) True AMCG00012177
TU169151 other upstream 545352 11436379 ~ 11446163 (+) True G134743
TU169087 other upstream 697616 11284750 ~ 11293899 (+) False G134697
TU169090 other upstream 700993 11242229 ~ 11290522 (+) False G134697
TU169086 other upstream 700993 11246682 ~ 11290522 (+) True G134697
TU168966 other upstream 1061062 10926606 ~ 10930453 (+) True G134613
TU169350 other downstream 1988 12030897 ~ 12031490 (+) True G134898
TU169413 other downstream 143629 12172538 ~ 12172802 (+) True G134955
TU169416 other downstream 152152 12181061 ~ 12181320 (+) True G134958
TU169428 other downstream 162646 12191555 ~ 12192408 (+) True G134968
TU169500 other downstream 537303 12566212 ~ 12716115 (+) False G135026

Expression Profile