RNA id: AMCG00012170


Basic Information

Item Value
RNA id AMCG00012170
length 2578
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00012170
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12109540 ~ 12122725 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCACAAGAGCGGCAAGAGAAGCAACTGGATCAATCATGTGCCAAATCCAACTTCTTTAACTCCTCACTCCTTTCCCTCTGCAGCACCAACGCGAAGAGCCGCTCTCACTTCTCCGCCATGGCTCTACAGCTGCTGGACATGGAGAGCAAGATCTCCTCGGTCATCCAGGACTACATGGAGAAGTCCAGCGCCGAGATCTCGCAGCTGCTGCAGGGATGCTTCGAGGACCTGGAGGCCGAGATCATCCGGGAGCAGGAGCAGAGGGAGCTGCTGACGGCGGAGCTGCAGaacctggaggaggagacggctTGGGCTTGGGCTCGGGAGGGAGCCGCGGAGCCGGCcggggccggggccggggccggggccggggccggggcGGGGGAGAGCGGTGCCAGAAAGGAAAACGTGTCTCTGAATGGATGGGGGAAAGATGCTGTTGCCAGCAAGATGAAGACACTGAAACCAAGTGGCACTCTGCGACTGGGTGTGGAACCAGGACAGGGCTCAAAGGTCAGGGAGGAGGCCTGTGGGAAGAGCATGCGCACccaggagaaagaggaggaggaagaggactcCTTTGTGGTGATCGAACTGGAGCCCTCCACCATCAATATACAGTTCAGCCAAGCGCCGACTACCTCTGCCCAGCTACGCCTGAAGCAGGCCAGGGACAGACAGGACGCTCTGGACATCCTCCAGATCACAAACACCCGGTCCCTGCTGCACAGCCCCTCGCCCTGCTGcactgcccctgcccctgctgCCCCCTCCGCCAGCCTCGGCCACGCTATGCAACCAGCATCCACACACAAGCTGGACGTCTCCTCTCCCGCTCGCAGACCCCGGGAGAAGTGCAAACAAGCTGCCACCCAGAGGCAGCCGGGGAGACTGTCAGGGAGGAAGATTTCTCTGGTGGACGCTCCCCAGGTTAAGGAGGGGGGCGGCCCCGACAAGAAAGTGGTGGTGGCGAAATTGGGAGTGCGGGAGGAGAAGGCCCAGCAGGTTTACTCCAAGATCAAGCTCCGCGTGAGGGACAGTAGGCTGGCCGTCACGGGAAACTTGGCGGAAACCAGCAGCCAGAGCAGTCCTCTCCCCTCCCACACAGATGCCAAGGAAAGCCCAGAGGCCGAGGCCGGAGAGACGTCTGCCAGCAGCGAGGACAGCGAGGACAGCGAGGAATGGCTGCCTGAGGATCTCAAGGAGGGGGCAGCAGATGGCCAGACCCACAGGCCGCTAAGCCCCCTCACCTGCGTCGGGTGTAAGAAGCGCTTCGTAGATAGAGACCTGTTCTGGAGTCACCCGTGCCTGCGCTCGGGGAGTAAGCCGCACAAGCTGACGTGCGGCATGTGCGGCAGCCGGTACCAGCGCCAGAACGGCCTGCAGAGGCACATCCTGAGGCAGCACGTGGAGGAGGAGCCGGAGCTCAAGCAGCGCTTCCAGTGCAGCCACTGCGATAAGAGCTTCAGCCGGTCCGACACCCTGAAGCACCACCTGCGCCTCCACACGGGCGAGAAGTTGTGCTCCTGCGCCAAGTGCGGGAAGAAGTTCTCCCTGCCCTGCCAGCTGAGACAACACCAGCTCATGTGCAAGAAATCCAATGGCCCCTGAGGCCCGGGCCGCAGAAACGCAGCCGGCGTCAGGAAGGGTGCTGCGCTCGTCTTTGCTGGGACGGGTTAAGTAGCCCGTGAATGCACAGAGGTGTCGCCGTGGCGGTGGGACAGGAGCAGTTGGGTCGTCACAACGCAGAGCGCGTCATTGAAACTGGAGCTCTACACTGTACCTGAGGGAGTTTTACAGCATTCTGTACACCGTGACCCTGAGGATGTTCACACGGTGACACTGACTTTCTAAAGGTGCCGAGGTGGCACTGTCGGATGCATAGTTATTTTAAATCCCCCTGGAAGGCTGTACTCTACTGAGAGTTTGTTCAACTTCTTTTTACTGTTTGTTACCACAGTTatgatgctgtttttttattaatcctTTAGATTTGTTgctgtatttcatttaaaaaaaaaaacctactaAACAcagcttgtgtttttaaaatggccTTCTGGTATCAGTATCTTTTTTTCGTCCACTCTGGGCAATCTGAGAAATGACAGCCAGGTGTCAAAGTCAGGAAACCTACATGAACTGCGTTAACCCTATAATGCCCATCCAAAGAAACAAGTACAAAGATGCTGTATTTggaacattaataatacatatgtataagttttcacattccttttttattatgaaaatgttgtgggtttattaatttaatgtgtgGTGCTTTTCCACACAGCATTTGCTAAGAAATTGCAGCGTTCCAAGAACGTAACAGTGCAACTATTCCCCATGGAGGTTACACAAGTCACCATTTGACTCGATTAAACTTAAACTGCATTGTAGCTCTGTCTGCATAGACCAAATATAAACATCATTCTAATTTGCACAGACCCAACTCCCCCCAAAACATTCACAAGACAGCCAGAAGGCAACAGTTGTATtaattctatgcaaaatgtaaatatataaaatggtatattttacttatttcatgGTTTCACAATAAAGATTGCTG

Function

GO: NA

KEGG:

id description
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169351 lncRNA downstream 91982 12014352 ~ 12017558 (-) True G134899
TU169296 lncRNA downstream 341586 11744894 ~ 11767954 (-) True G134855
TU169293 lncRNA downstream 343124 11766072 ~ 11766416 (-) True G134853
TU169288 lncRNA downstream 449235 11659721 ~ 11660305 (-) True G134849
TU169280 lncRNA downstream 505383 11603523 ~ 11604157 (-) True G134844
TU169465 lncRNA upstream 143878 12266603 ~ 12266826 (-) True G135002
TU169471 lncRNA upstream 239810 12362535 ~ 12362840 (-) True G135008
TU169716 lncRNA upstream 443948 12566673 ~ 12589807 (-) True G135148
TU169707 lncRNA upstream 445526 12568251 ~ 12716110 (-) False G135146
TU169728 lncRNA upstream 456140 12578865 ~ 12632059 (-) False G135151
AMCG00012171 mRNA downstream 2126 12101244 ~ 12107414 (-) False AMCG00012171
AMCG00012166 mRNA downstream 58329 12042632 ~ 12051211 (-) True AMCG00012166
AMCG00012165 mRNA downstream 67452 12038225 ~ 12042088 (-) True AMCG00012165
AMCG00012163 mRNA downstream 77403 12030068 ~ 12032137 (-) True AMCG00012163
AMCG00012164 mRNA downstream 144722 11924321 ~ 11964818 (-) True AMCG00012164
AMCG00012169 mRNA upstream 19785 12142510 ~ 12146911 (-) True AMCG00012169
AMCG00012175 mRNA upstream 30444 12153169 ~ 12179736 (-) True AMCG00012175
AMCG00012176 mRNA upstream 58388 12181113 ~ 12185826 (-) True AMCG00012176
AMCG00012174 mRNA upstream 67290 12190015 ~ 12211955 (-) False AMCG00012174
AMCG00012173 mRNA upstream 100569 12223294 ~ 12226142 (-) True AMCG00012173
TU169384 other downstream 7567 12074004 ~ 12101973 (-) True AMCG00012171
TU169224 other downstream 722561 11330466 ~ 11386979 (-) True G134803
TU169020 other downstream 1147669 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 1297659 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 1853502 10255526 ~ 10256038 (-) True G134447
TU169437 other upstream 68830 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 80037 12202762 ~ 12213799 (-) False AMCG00012174
TU169444 other upstream 98480 12221205 ~ 12223185 (-) True G134981
TU169690 other upstream 511029 12633754 ~ 12960922 (-) False G135146
TU169730 other upstream 579725 12702450 ~ 12703485 (-) True G135152

Expression Profile