RNA id: AMCG00012171


Basic Information

Item Value
RNA id AMCG00012171
length 980
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00012171
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12074004 ~ 12107414 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTTCATCACGACTGTGGCTTCCGGGTTCTCTGATCACTTCCGGGTGGAGGGGATGGAGGCGCTGTGGATGCGCTGTTGAGCGCCGCGTTTATAACACAAAGTCAATTAGCCAACCAACCGCCGAACAGACGCATGGAAACTATAAACCGCGTCTGAACTGCAACAACGGCAGCCGCGATGGAAATAATCGTGCACACGTCGGACTTCCACGGCCAGCTCTCCTCTCTGATGGACTGCCTGCTGAAGCAAGCCGTGTCCGGCGTCACCAAGCTCGTCGAGGACAGTTTCGCCGCCTTCCAGAGGGAGATCACCGCCAGGGAGGCCGACATCAAGCAGCTGGAGGCCCGGCTGGAGGTGTCGGAGACAGAGCTGAGACGCGCCATGGAGAGCGGCTGTGCAGGCGGAACCCAAAGCAGCCAGGAAACGGGGGCCGGGGACGGCGGAACGGGAGGCACCGCAGTCGCTGGTCAAGAGCTGGCCCAGGGTGCGGCCTTTGTCCAGGAGGGGACCATGATGGTGGCCCAGGGCTACCCGGAAATAGTACATATCATTGTGGGCACCCAGTCCTTCTCCTGCGCCAATCCCGAGGGTatggaggcggaggaggaggtaggacaggaggaggaggtggaggaggaggtggaggaggccGCTTTCGCCGCCGCCACCATAGTGGGCGCCATCAACGAGCACGACTACGAGCCGCAGCTGCCCCGCCAGACCCAGGACCCGCCCCCGCAGGACGAGGCTGGCGATGGTACCTACCAGGTGGGGCACTGCAGCAGCCCTGACTCCCAGGGCAGGTCAGAGCTGCGGCTGGTGTTTCACAGTTACCCCAATGTTTGCACAGCTGCCGTTGACTGGCGGAGGCTCTGGTCATGGGGAGGCGgcgggagggagagggaatggAAGGTGGCACTGGTGGTTAAAGATGGTGGAAGGAGGAAGGGAAGGAAGCCCACTTTGAGCCAGAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169351 lncRNA downstream 83686 12014352 ~ 12017558 (-) True G134899
TU169296 lncRNA downstream 333290 11744894 ~ 11767954 (-) True G134855
TU169293 lncRNA downstream 334828 11766072 ~ 11766416 (-) True G134853
TU169288 lncRNA downstream 440939 11659721 ~ 11660305 (-) True G134849
TU169280 lncRNA downstream 497087 11603523 ~ 11604157 (-) True G134844
TU169392 lncRNA upstream 10926 12118340 ~ 12118592 (-) True G134936
TU169465 lncRNA upstream 159189 12266603 ~ 12266826 (-) True G135002
TU169471 lncRNA upstream 255121 12362535 ~ 12362840 (-) True G135008
TU169716 lncRNA upstream 459259 12566673 ~ 12589807 (-) True G135148
TU169707 lncRNA upstream 460837 12568251 ~ 12716110 (-) False G135146
AMCG00012166 mRNA downstream 50033 12042632 ~ 12051211 (-) True AMCG00012166
AMCG00012165 mRNA downstream 59156 12038225 ~ 12042088 (-) True AMCG00012165
AMCG00012163 mRNA downstream 69107 12030068 ~ 12032137 (-) True AMCG00012163
AMCG00012164 mRNA downstream 136426 11924321 ~ 11964818 (-) True AMCG00012164
AMCG00012160 mRNA downstream 204627 11890351 ~ 11896617 (-) True AMCG00012160
AMCG00012170 mRNA upstream 2126 12109540 ~ 12122725 (-) True AMCG00012170
AMCG00012169 mRNA upstream 35096 12142510 ~ 12146911 (-) True AMCG00012169
AMCG00012175 mRNA upstream 45755 12153169 ~ 12179736 (-) True AMCG00012175
AMCG00012176 mRNA upstream 73699 12181113 ~ 12185826 (-) True AMCG00012176
AMCG00012174 mRNA upstream 82601 12190015 ~ 12211955 (-) False AMCG00012174
TU169224 other downstream 714265 11330466 ~ 11386979 (-) True G134803
TU169020 other downstream 1139373 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 1289363 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 1845206 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 1850129 10250271 ~ 10251115 (-) True G134445
TU169390 other upstream 11866 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 84141 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other upstream 95348 12202762 ~ 12213799 (-) False AMCG00012174
TU169444 other upstream 113791 12221205 ~ 12223185 (-) True G134981
TU169690 other upstream 526340 12633754 ~ 12960922 (-) False G135146

Expression Profile