RNA id: AMCG00012173


Basic Information

Item Value
RNA id AMCG00012173
length 1297
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00012173
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12223294 ~ 12226142 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGATATCATTAGTTACCGAAACAGTTTTTGGTGTAGTTTGCTAACCATATATTGCAatcattaaatgcattattttatcagCTAAGCAACAAATGGTGCAAATGGTCACATgacaggaggaagaggagggtgTTGTTGCTAGGGAAGCCTGCACACCACAGCATTTGTCATTTcggattttaaaatactcaacACCAAACTGAACCGCACATATAGTAATAGCTTCAATGTTTGCATGCgttttaatttctaattttaTTATACGATAATTGCAATCGTTTGTAATCGTTGCGTGCTGGGAGATGAAGGGGAATAAGACTTTAACAATGcctcATCCTCTGAAGCCCAGAGTGTTGCTGTGggCTGACCTGAGCTACAGCGACATGGAAGAGGTGGAGGCGGCGCAGAGTACAGAGCGGCTGCAGAGcgTGCTGGCCCGTGTGCTGGGCCTGCGGGTGTCCGAGCCCAGGGACGGGGTGCTGGTGGACCTGTACCTGTACGCAGTGCTGTTCTGCAGGGGGCGGGGCTTCAACAGGGAGCAGACCGCCACCCTGCTGTCCATCATCAGAGCTGTGCACCTGGCCAACACTGTCccccgtctgtctctctgtctctctctgcagcgCCCTCCCTTCAGTATCGATCTCTACAGCCCAGAGGAGGCCACGCAGGTCACAGAGTACCTGGTCAACTCGTACTTCAGACACTACAGCCTGTACAAATACACCTTCACTCCACAGgtgagACTTGACCTCTCCCTGTCTTACACAGGAATGGTTGACCCAGACGCAACAGACTCTGCGTCCCAGATGGCAGCCCCCAAGGCGGACGGagccagagagacagaggcagagagagagcgggggatGGACACAGatgcagagagacagaccgaGCAACCTCTGGGCACCAGCGCACACAGCCCCTCCCCCAGGGCGGAGCTGAGGCAGCTGGTCCAATCGGAGCTTAGTGTGGAGTTGGGGCGGGTGCAGGCGGCACTGGAGTAGAGGCTGAGAGAGAGTGGCGAGAAGCTGGGCGCCCGGCTGGCATCCCTGGAGACCCACCGACACAAGAAATGATACCTGCGGCCTGGTGTCGAATCACACACATGTACAGCCATGACTAGAGAAAAATCATCAGTTTTTTCTGTACGTCTGTCACTCTTTGATAGTCAATAAAAATAACCAGACATGTTTCAACACTTCTAacacttgtttgtgtgtgtgggagtgtttgagtccatttgtgtgtgtgtgtgtggtgtgtacaGTGGTGTCTAGTTAGTATATCTGTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169392 lncRNA downstream 104702 12118340 ~ 12118592 (-) True G134936
TU169351 lncRNA downstream 205736 12014352 ~ 12017558 (-) True G134899
TU169296 lncRNA downstream 455340 11744894 ~ 11767954 (-) True G134855
TU169293 lncRNA downstream 456878 11766072 ~ 11766416 (-) True G134853
TU169288 lncRNA downstream 562989 11659721 ~ 11660305 (-) True G134849
TU169465 lncRNA upstream 40461 12266603 ~ 12266826 (-) True G135002
TU169471 lncRNA upstream 136393 12362535 ~ 12362840 (-) True G135008
TU169716 lncRNA upstream 340531 12566673 ~ 12589807 (-) True G135148
TU169707 lncRNA upstream 342109 12568251 ~ 12716110 (-) False G135146
TU169728 lncRNA upstream 352723 12578865 ~ 12632059 (-) False G135151
AMCG00012174 mRNA downstream 11339 12190015 ~ 12211955 (-) False AMCG00012174
AMCG00012176 mRNA downstream 37468 12181113 ~ 12185826 (-) True AMCG00012176
AMCG00012175 mRNA downstream 43558 12153169 ~ 12179736 (-) True AMCG00012175
AMCG00012169 mRNA downstream 76383 12142510 ~ 12146911 (-) True AMCG00012169
AMCG00012170 mRNA downstream 100569 12109540 ~ 12122725 (-) True AMCG00012170
AMCG00012180 mRNA upstream 42083 12268225 ~ 12279242 (-) True AMCG00012180
AMCG00012179 mRNA upstream 92759 12318901 ~ 12340418 (-) True AMCG00012179
AMCG00012183 mRNA upstream 177850 12403992 ~ 12423343 (-) True AMCG00012183
AMCG00012184 mRNA upstream 208354 12434496 ~ 12440472 (-) True AMCG00012184
AMCG00012185 mRNA upstream 257386 12483528 ~ 12504505 (-) True AMCG00012185
TU169444 other downstream 109 12221205 ~ 12223185 (-) True G134981
TU169437 other downstream 9495 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other downstream 9495 12202762 ~ 12213799 (-) False AMCG00012174
TU169390 other downstream 103662 12119280 ~ 12119632 (-) False AMCG00012170
TU169384 other downstream 121321 12074004 ~ 12101973 (-) True AMCG00012171
TU169690 other upstream 407612 12633754 ~ 12960922 (-) False G135146
TU169730 other upstream 476308 12702450 ~ 12703485 (-) True G135152
TU169700 other upstream 654151 12880293 ~ 12990631 (-) False G135146
TU169712 other upstream 654151 12880293 ~ 13426065 (-) False G135146
TU169749 other upstream 669026 12895168 ~ 12911887 (-) True G135164

Expression Profile