RNA id: AMCG00012174


Basic Information

Item Value
RNA id AMCG00012174
length 2877
RNA type mRNA
GC content 0.70
exon number 18
gene id AMCG00012174
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12190015 ~ 12213799 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atGGTCGGCGTGTGCGGCTGTCGAGAGCAGGGGGAGCCGATAGTTAATGGCAGCGGAGAGGCCGAGCTCCCGTCCCCGGCAGGCAGCGCCATGGAGCGCGAAAACGGTTTATTTAACAGAAACCCCACCGTCCACGGGGGGTTTGCAGACGACGCTGGCTCTGAGGGACCCGGGACTCTTATTCGTGTCGACATGGACGGGCCGGGCCGCAGCAGCGGCTTCAGGCAGAGCCGGCGGTCCCGCTCGCAGCGCGACAGAGAGCGGCGCCGCCGGAGATCCGACCTCGCCGAGCAGCGGGCCTCGTCGCCCTCCTCGGGCTCGGAGAGGGAGGCGGCGGGCGGCGGGGACGCGGCGACGGGCGGCGGCGGGGAGTGCAGGCCGGGCGCCGCCAGCAGCAGACACAGGCCGCCGCGCCGGCGAAAACGGGAGTCGGTGTCGTGCGAGGAGGACATCATCGACGGGTTCGCCATCGCCAGCTTCATCAGCCTGGAGGCCCTGGAGAAGGATGGCTCCATGAAGGCCCCGGAGCGCGCAGCTGTGTGGGACCGCCGGGGGGGCAAGCGGAAGCGGCTGGAGGACGGGCCGCATTCGGAGCCTGACGACGGGGATTCCCTCCCGCACCACCCTCCCGCCTTCTGCAGCCGAGACCATGGCAATGAGCAGAGGGCCagcaagaggaggaggaagagagagGGCCCCGGTGGTGTGTTTCTGGAGACTGGCTACATTTGCGACACAGAGAGTGACTCTGGAGACAGGGTGTCGGATGATGAGATGGATCAGATGTTTACTGTAACCACCAGAAAAGtatCGGAGACGGCCGTGACCCCGATGAACGGCCGCGCCTGTGCCCCCCCAGGCCCGCCCCGGCTCTCGGTGACGCCCCGCGTTTCGGGTCTCCAGCGCAGCCAGGAGAGGAGCCAGGAGCCCCTGCCCCGCGACAGCCTGCTGCTCACCGGCCCCCTGtccatctccctccctcacccccATCCCGCCCCCTCCGCCAGTGCCGCCGCCGCCTCCTCCACCTCCGCCCCCCAGGCCCTGCCGCCCCGCGCCCTCCCCCGCCCCCGCCACACGCCCTCCCCCGCACCCCCTGCCGCCCTACCCCAGCTCACCTGCGAAGGCCACCCAGCCTCCCAcgcccccagccccccccagcCCAAGAACAAACCTCCTTCCCTGTCcttccccaaccccccccaGTCAGTGTACAGTAGCGGTCTAGGCCTCAACAACGTCAGGTTGCCCCCGTCTCGCCGCCCCACCACCCCCTCCTCTGGCCTGGCCCTGTCTCTGGGCACCCCCGGTGGCCCCCCGTCCACCCACGGCTACCCCGGCGCCCTGCGGCCCCCCTCGCACCCGGGCACTGGGGCGGCCGGCCTGTTCACCTCATCCCCAGGCCTGCCGCCTCCCCCGCCGCTGCTGCAGGTGCCCAGCCACGCGGCCTCTGCCAACACGGCGGCGGCCTTCACAGagCAGGACCTGTTACGTCAGGAGCTGAACTCGCGCTTCCTGACCTCCCAGAATGCGGGGTCTCGCAGTGGGGGGGACAGCGCGGGGGGCGCAGGGGCAGCGGAGGGCCGGGCCGGGGCGTCATCGGGGGGCTCGGCGTCCGGCGGCACCCCTGGCTCCGGTACCGGCGCCTCCTCGGCCCAGCCCGCCATCCCTCACCTGGCCTTCCAGTTCCACCAGCACAaccaccagcaccagcacaCCCACACCCACCAACACTTCACGCCCTTCCTGGCACCGCCCGCTGCAGCGCCCCCTCTGttcgaCAAGTACCCAGGGAAGATGGATGGGCTGTACCGACACACTTTCTACCCCCCCTACACCCCCTCTGTGCCCGGGATCCCGCCCGTGCTGCCCCCAGCTGGGCCCTTCAGCTCACTGCAAGGAGCATTTCAGCCTAAGGCAACCAATCCAGAGATGGCAGCTCGCCTGGGGGCGGTCCCTCACCCGCTGCAGCCCAAAGACCCCCGGAAGCCGGGGAAGTGGTGTGCTATGCACGTACGGGTGGCCTGGATGATCCTCCGACACCAGGAGAAAGTCAAGcAGATGCAGGCTGATCCTCACAAGCTGGACTTCCGCAGTGACCTGCTGGCTCGACTTCCTGGGGCGGGGGGCCTGGGGGGGCTCGGGGGGCTGCCCCGGCCTGCCCTCTTCACTGCTGCTGGTGAGGGATTGGGgttggagagggagaggggaggaggggtggTTTTTCAATatCCCTTTGGCCGCTCTCCATCCTTCACACCGCTGGGCGCTCTGGGGAACGGGGCGTTCGGCGGCCTGGGCAGCCCCACACTGGGAGCCAGCTCCATGTTCGGACACAAGGAGTCCCCGGGGGGGCCGGCTGCGAGCTTCGCCAACCCCCACGACCCCTGGAACCGGCTGCATCGCACCCCGCCTTCCTTCCCCACCGCCCCCGCCTGGAGCAAGGGCCCAGACAGCGAAAGGGAGCGTGATCGCGAGCgggagcgggagagggagcGTGATCGCGAGCgggagcgggagagggagagggagcgcgagcgggaaagagagagggaacgGGAGCGTGAACGAGAGAGGGAGCGTGAACGAGAGAGGGAGCATGAACGAGACAATGAAAAGAGAGAGATCCCCCTCATCAAGGACGAGAAGGATCGCGACAGCTCCGCCTACGGCCGCCACCCCGTCAGGATGTCGCCGGCCGCCCAGCCTCCCCGGCTGCCCCCCCAGCACAAGTCGAGCCACGTCTCCCACAGCAATGGCCACGCTGCGGGAGGAGGGGCCCCGGAGGACGATGCCCCCCGAGCACAGAGCCGGGAGCGGGAGAGGGACCGAGACCGGGACAGGGATGGCTACTGCACCTGCTTTGCCCTGGATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169392 lncRNA downstream 71423 12118340 ~ 12118592 (-) True G134936
TU169351 lncRNA downstream 172457 12014352 ~ 12017558 (-) True G134899
TU169296 lncRNA downstream 422061 11744894 ~ 11767954 (-) True G134855
TU169293 lncRNA downstream 423599 11766072 ~ 11766416 (-) True G134853
TU169288 lncRNA downstream 529710 11659721 ~ 11660305 (-) True G134849
TU169465 lncRNA upstream 54648 12266603 ~ 12266826 (-) True G135002
TU169471 lncRNA upstream 150580 12362535 ~ 12362840 (-) True G135008
TU169716 lncRNA upstream 354718 12566673 ~ 12589807 (-) True G135148
TU169707 lncRNA upstream 356296 12568251 ~ 12716110 (-) False G135146
TU169728 lncRNA upstream 366910 12578865 ~ 12632059 (-) False G135151
AMCG00012176 mRNA downstream 4189 12181113 ~ 12185826 (-) True AMCG00012176
AMCG00012175 mRNA downstream 10279 12153169 ~ 12179736 (-) True AMCG00012175
AMCG00012169 mRNA downstream 43104 12142510 ~ 12146911 (-) True AMCG00012169
AMCG00012170 mRNA downstream 67290 12109540 ~ 12122725 (-) True AMCG00012170
AMCG00012171 mRNA downstream 82601 12101244 ~ 12107414 (-) False AMCG00012171
AMCG00012173 mRNA upstream 11339 12223294 ~ 12226142 (-) True AMCG00012173
AMCG00012180 mRNA upstream 56270 12268225 ~ 12279242 (-) True AMCG00012180
AMCG00012179 mRNA upstream 106946 12318901 ~ 12340418 (-) True AMCG00012179
AMCG00012183 mRNA upstream 192037 12403992 ~ 12423343 (-) True AMCG00012183
AMCG00012184 mRNA upstream 222541 12434496 ~ 12440472 (-) True AMCG00012184
TU169390 other downstream 70383 12119280 ~ 12119632 (-) False AMCG00012170
TU169384 other downstream 88042 12074004 ~ 12101973 (-) True AMCG00012171
TU169224 other downstream 803036 11330466 ~ 11386979 (-) True G134803
TU169020 other downstream 1228144 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 1378134 10729775 ~ 10811881 (-) True G134581
TU169444 other upstream 9250 12221205 ~ 12223185 (-) True G134981
TU169690 other upstream 421799 12633754 ~ 12960922 (-) False G135146
TU169730 other upstream 490495 12702450 ~ 12703485 (-) True G135152
TU169700 other upstream 668338 12880293 ~ 12990631 (-) False G135146
TU169712 other upstream 668338 12880293 ~ 13426065 (-) False G135146

Expression Profile