RNA id: TU169436


Basic Information

Item Value
RNA id TU169436
length 3225
RNA type TUCP
GC content 0.58
exon number 6
gene id AMCG00012174
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12190015 ~ 12213799 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGAGCAGCAGCGAGTGAACGGGCAGAGGAagtgagacagacaggcagctgTGGGACACAAGCGGCGGCTTTAGTCAATAGACAAGACTTAGgaaggaggaaaagaaagaaagaaaaaaaaaaagaggaagacGGTGACGGCAGGAGAGGCAGCAGCGGCCGCATCGCCCAGCCCTTGTGACTATACTGTCCCTGTTGTGTTGTTGTCGTGGGGGTGTTGGGGAGAGAGACGGGGTAACAGATACCGACATGACGGTCAAGTGGGACCGGGGGCTTTGGAGACAGCCCGGGGAGTGACCGGCAGTCGCTCAGCCGTCATAGTGTCAGTGATTGtggtatttgtgtttaaataagtGGGGGAATTAAGGTCTATACAGCGGGCGCAGAGAGGAAACACTGCCCGGACCCAGACAGGGAGGTTCGGGTATCGATCCGAGGAGGCGCTGGTGTtagagaggcagggaggaaaCCGGACTTTCCAGTCTGTAACTGACATACATCTAACAAACACCTACAAACACAGGCCTTGCGACAACAATACGAGCAAACGGACGCCGCTGTCCTCTAGCCCCTGGGGGCCGGGCCGCCGCGAACGACATCCCCGGGGCGCAGAGCTCTGAACCGGGGCGCCCCTGAAACCCGCTCGCCTTCCGTGCCCCCTGTGGCGGCTCCTCCACTCAcacccctcctctccctccctccatccctcccttcCAGCGCACACTCCGATCCCCCTCCCCCTCGCCTCCATATGTGTACATCCCAGCCCGGTGGTAGTATTGTGCACACAACAGCACCCTGGCTCCGGACGCGCTATTTACAGCCGCTTTTCTCTCTCGACCCGCCCGCTCCGACGCGGAAAGGCAACCGCCCGGTCCACACGCGGTCTGCGAGGGCTTGTACGGGAGGACTCTTTTGTTAAAAACTGGTGAATTTGCGGCCCCCAACCTCCCCTtgtccccccccctctcttcgTTGTCGTCGTCGTCCCTCCTCCCCCTGGTTGGCTCCAGCGGGCCGCGGAAGAAGGAGGAGTCCGGTCAGCAGGCTCGCCTCGCCAGGATGTGGATGTAAATCGAGGCCGAGGCTTCCAGCGCGTCCGCCGTACATTCTCGGGCCTGGGGACTTTCTTTAATGGATGCGGAAAGTGAAGAGCCAATAGCCAAAGCACCGCGTCCGTCCAATCTGCTCCCGGGGAGAGGAGCTGCACCTCGGGGCCTCCATCTGATGAGTTATCGGGGATCGCCGTGTTTACCTCCGCGCTGTTTTTGTCGTTTTTCGGGGTTATTTTGTTGGCAGCCCAGAAAGGGGAGCTCGATTCAAGGGAAGGGCCTGTTGAAAACGGCATCCTAATACAGAAAACTGTTTTACAGCAGTAATACAGACACGGGGCCAGCTTttttttgtgtactttttattataaaagtaGGCTTTTTAATGAGCTCGCATTAATTATCGTGTATGAAGACGTGTATCATTTCTGCGGTTGTTGGGTAGTATCGTTTATAGCACTGCCGATAACACTTATTAacatatgtctatatatatgtgtgtgtatataaatgtcatTTGTATGGATAAACCCGTGTCCAAATTCCGTGCCAATTTGACGCATTTCGGATAAAAGCCAATATACCGAGCCGGAACCGGgaagcacatttattatttattaatattttattgccattattattattattgtttttcggAGACGCACAGAAAAGCACAGCGGccgccatttatttatttatttatttattaatcacgGACCGAAAGCTGGGCAGACCTTTATGCTGAAAGGTGGCAACATTTCAAtaacagaggaagaggaggagaaagaaagatGGTCGGCGTGTGCGGCTGTCGAGAGCAGGGGGAGCCGATAGTTAATGGCAGCGGAGAGGCCGAGCTCCCGTCCCCGGCAGGCAGCGCCATGGAGCGGTGAACCCCGGTGGACACGGCGGTAAAACCCCATTCAGCGATGCGTCTGTGACTGATTTCCCCCGGAGAGGCCAGTTTCGTGGGACCATGGCGTGTGACTTGACTCGCATCGGCGACGGATCCGGAGCGTAGACGGCAGATATTGCGATATTGTTATTGCAGGGAGGAAGCTTAGTTTGTGTGCATCTCCCATTTTGTCTCCCCTTTCCCCCCGAAAAAGacattttttgattttattatagaGGGGGAGTGCGGTAGGAAGccagggaggggagggagctTCTTTATGTGGAAATTACAAAAGGTGACGAAACCAGTACCGCTTTGAGAGACAATTATATACGATTATATAttgcaattaaacaatatataggAAGCGAAAACGGTTTATTTAACAGAAACCCCACCGTCCACGGGGGGTTTGCAGACGACGCTGGCTCTGAGGGACCCGGGACTCTTATTCGTGTCGACATGGACGGGCCGGGCCGCAGCAGCGGCTTCAGGCAGAGCCGGCGGTCCCGCTCGCAGCGCGACAGAGAGCGGCGCCGCCGGAGATCCGACCTCGCCGAGCAGCGGGCCTCGTCGCCCTCCTCGGGCTCGGAGAGGGAGGCGGCGGGCGGCGGGGACGCGGCGACGGGCGGCGGCGGGGAGTGCAGGCCGGGCGCCGCCAGCAGCAGACACAGGCCGCCGCGCCGGCGAAAACGGGAGTCGGTGTCGTGCGAGGAGGACATCATCGACGGGTTCGCCATCGCCAGCTTCATCAGCCTGGAGGCCCTGGAGAAGGATGGCTCCATGAAGGCCCCGGAGCGCGCAGCTGTGTGGGACCGCCGGGGGGGCAAGCGGAAGCGGCTGGAGGACGGGCCGCATTCGGAGCCTGACGACGGGGATTCCCTCCCGCACCACCCTCCCGCCTTCTGCAGCCGAGACCATGGCAATGAGCAGAGGGCCagcaagaggaggaggaagagagagGGCCCCGGTGGTGTGTTTCTGGAGACTGGCTACATTTGCGACACAGAGAGTGACTCTGGAGACAGGGTGTCGGATGATGAGATGGATCAGATGTTTACTGTAACCACCAGAAAAGtatCGGAGACGGCCGTGACCCCGATGAACGGCCGCGCCTGTGCCCCCCCAGGCCCGCCCCGGCTCTCGGTGACGCCCCGCGTTTCGGGTCTCCAGCGCAGCCAGGAGAGGAGCCAGGAGCCCCTGCCCCGCGACAGCCTGCTGCTCACCGGCCCCCTGtccatctccctccctcacccccATCCCGCCCCCTCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169392 lncRNA downstream 84170 12118340 ~ 12118592 (-) True G134936
TU169351 lncRNA downstream 185204 12014352 ~ 12017558 (-) True G134899
TU169296 lncRNA downstream 434808 11744894 ~ 11767954 (-) True G134855
TU169293 lncRNA downstream 436346 11766072 ~ 11766416 (-) True G134853
TU169288 lncRNA downstream 542457 11659721 ~ 11660305 (-) True G134849
TU169465 lncRNA upstream 52804 12266603 ~ 12266826 (-) True G135002
TU169471 lncRNA upstream 148736 12362535 ~ 12362840 (-) True G135008
TU169716 lncRNA upstream 352874 12566673 ~ 12589807 (-) True G135148
TU169707 lncRNA upstream 354452 12568251 ~ 12716110 (-) False G135146
TU169728 lncRNA upstream 365066 12578865 ~ 12632059 (-) False G135151
AMCG00012176 mRNA downstream 16936 12181113 ~ 12185826 (-) True AMCG00012176
AMCG00012175 mRNA downstream 23026 12153169 ~ 12179736 (-) True AMCG00012175
AMCG00012169 mRNA downstream 55851 12142510 ~ 12146911 (-) True AMCG00012169
AMCG00012170 mRNA downstream 80037 12109540 ~ 12122725 (-) True AMCG00012170
AMCG00012171 mRNA downstream 95348 12101244 ~ 12107414 (-) False AMCG00012171
AMCG00012173 mRNA upstream 9495 12223294 ~ 12226142 (-) True AMCG00012173
AMCG00012180 mRNA upstream 54426 12268225 ~ 12279242 (-) True AMCG00012180
AMCG00012179 mRNA upstream 105102 12318901 ~ 12340418 (-) True AMCG00012179
AMCG00012183 mRNA upstream 190193 12403992 ~ 12423343 (-) True AMCG00012183
AMCG00012184 mRNA upstream 220697 12434496 ~ 12440472 (-) True AMCG00012184
TU169390 other downstream 83130 12119280 ~ 12119632 (-) False AMCG00012170
TU169384 other downstream 100789 12074004 ~ 12101973 (-) True AMCG00012171
TU169224 other downstream 815783 11330466 ~ 11386979 (-) True G134803
TU169020 other downstream 1240891 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 1390881 10729775 ~ 10811881 (-) True G134581
TU169444 other upstream 7406 12221205 ~ 12223185 (-) True G134981
TU169690 other upstream 419955 12633754 ~ 12960922 (-) False G135146
TU169730 other upstream 488651 12702450 ~ 12703485 (-) True G135152
TU169700 other upstream 666494 12880293 ~ 12990631 (-) False G135146
TU169712 other upstream 666494 12880293 ~ 13426065 (-) False G135146

Expression Profile