RNA id: TU169437


Basic Information

Item Value
RNA id TU169437
length 5337
RNA type TUCP
GC content 0.63
exon number 18
gene id AMCG00012174
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12190015 ~ 12213799 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGAGCAGCAGCGAGTGAACGGGCAGAGGAagtgagacagacaggcagctgTGGGACACAAGCGGCGGCTTTAGTCAATAGACAAGACTTAGgaaggaggaaaagaaagaaagaaaaaaaaaaagaggaagacGGTGACGGCAGGAGAGGCAGCAGCGGCCGCATCGCCCAGCCCTTGTGACTATACTGTCCCTGTTGTGTTGTTGTCGTGGGGGTGTTGGGGAGAGAGACGGGGTAACAGATACCGACATGACGGTCAAGTGGGACCGGGGGCTTTGGAGACAGCCCGGGGAGTGACCGGCAGTCGCTCAGCCGTCATAGTGTCAGTGATTGtggtatttgtgtttaaataagtGGGGGAATTAAGGTCTATACAGCGGGCGCAGAGAGGAAACACTGCCCGGACCCAGACAGGGAGGTTCGGGTATCGATCCGAGGAGGCGCTGGTGTtagagaggcagggaggaaaCCGGACTTTCCAGTCTGTAACTGACATACATCTAACAAACACCTACAAACACAGGCCTTGCGACAACAATACGAGCAAACGGACGCCGCTGTCCTCTAGCCCCTGGGGGCCGGGCCGCCGCGAACGACATCCCCGGGGCGCAGAGCTCTGAACCGGGGCGCCCCTGAAACCCGCTCGCCTTCCGTGCCCCCTGTGGCGGCTCCTCCACTCAcacccctcctctccctccctccatccctcccttcCAGCGCACACTCCGATCCCCCTCCCCCTCGCCTCCATATGTGTACATCCCAGCCCGGTGGTAGTATTGTGCACACAACAGCACCCTGGCTCCGGACGCGCTATTTACAGCCGCTTTTCTCTCTCGACCCGCCCGCTCCGACGCGGAAAGGCAACCGCCCGGTCCACACGCGGTCTGCGAGGGCTTGTACGGGAGGACTCTTTTGTTAAAAACTGGTGAATTTGCGGCCCCCAACCTCCCCTtgtccccccccctctcttcgTTGTCGTCGTCGTCCCTCCTCCCCCTGGTTGGCTCCAGCGGGCCGCGGAAGAAGGAGGAGTCCGGTCAGCAGGCTCGCCTCGCCAGGATGTGGATGTAAATCGAGGCCGAGGCTTCCAGCGCGTCCGCCGTACATTCTCGGGCCTGGGGACTTTCTTTAATGGATGCGGAAAGTGAAGAGCCAATAGCCAAAGCACCGCGTCCGTCCAATCTGCTCCCGGGGAGAGGAGCTGCACCTCGGGGCCTCCATCTGATGAGTTATCGGGGATCGCCGTGTTTACCTCCGCGCTGTTTTTGTCGTTTTTCGGGGTTATTTTGTTGGCAGCCCAGAAAGGGGAGCTCGATTCAAGGGAAGGGCCTGTTGAAAACGGCATCCTAATACAGAAAACTGTTTTACAGCAGTAATACAGACACGGGGCCAGCTTttttttgtgtactttttattataaaagtaGGCTTTTTAATGAGCTCGCATTAATTATCGTGTATGAAGACGTGTATCATTTCTGCGGTTGTTGGGTAGTATCGTTTATAGCACTGCCGATAACACTTATTAacatatgtctatatatatgtgtgtgtatataaatgtcatTTGTATGGATAAACCCGTGTCCAAATTCCGTGCCAATTTGACGCATTTCGGATAAAAGCCAATATACCGAGCCGGAACCGGgaagcacatttattatttattaatattttattgccattattattattattgtttttcggAGACGCACAGAAAAGCACAGCGGccgccatttatttatttatttatttattaatcacgGACCGAAAGCTGGGCAGACCTTTATGCTGAAAGGTGGCAACATTTCAAtaacagaggaagaggaggagaaagaaagatGGTCGGCGTGTGCGGCTGTCGAGAGCAGGGGGAGCCGATAGTTAATGGCAGCGGAGAGGCCGAGCTCCCGTCCCCGGCAGGCAGCGCCATGGAGCGGTGAACCCCGGTGGACACGGCGGTAAAACCCCATTCAGCGATGCGTCTGTGACTGATTTCCCCCGGAGAGGCCAGTTTCGTGGGACCATGGCGTGTGACTTGACTCGCATCGGCGACGGATCCGGAGCGTAGACGGCAGATATTGCGATATTGTTATTGCAGGGAGGAAGCTTAGTTTGTGTGCATCTCCCATTTTGTCTCCCCTTTCCCCCCGAAAAAGacattttttgattttattatagaGGGGGAGTGCGGTAGGAAGccagggaggggagggagctTCTTTATGTGGAAATTACAAAAGGTGACGAAACCAGTACCGCTTTGAGAGACAATTATATACGATTATATAttgcaattaaacaatatataggAAGCGAAAACGGTTTATTTAACAGAAACCCCACCGTCCACGGGGGGTTTGCAGACGACGCTGGCTCTGAGGGACCCGGGACTCTTATTCGTGTCGACATGGACGGGCCGGGCCGCAGCAGCGGCTTCAGGCAGAGCCGGCGGTCCCGCTCGCAGCGCGACAGAGAGCGGCGCCGCCGGAGATCCGACCTCGCCGAGCAGCGGGCCTCGTCGCCCTCCTCGGGCTCGGAGAGGGAGGCGGCGGGCGGCGGGGACGCGGCGACGGGCGGCGGCGGGGAGTGCAGGCCGGGCGCCGCCAGCAGCAGACACAGGCCGCCGCGCCGGCGAAAACGGGAGTCGGTGTCGTGCGAGGAGGACATCATCGACGGGTTCGCCATCGCCAGCTTCATCAGCCTGGAGGCCCTGGAGGATGGCTCCATGAAGGCCCCGGAGCGCGCAGCTGTGTGGGACCGCCGGGGGGGCAAGCGGAAGCGGCTGGAGGACGGGCCGCATTCGGAGCCTGACGACGGGGATTCCCTCCCGCACCACCCTCCCGCCTTCTGCAGCCGAGACCATGGCAATGAGCAGAGGGCCagcaagaggaggaggaagagagagGGCCCCGGTGGTGTGTTTCTGGAGACTGGCTACATTTGCGACACAGAGAGTGACTCTGGAGACAGGGTGTCGGATGATGAGATGGATCAGATGTTTACTGTAACCACCAGAAAAGtatCGGAGACGGCCGTGACCCCGATGAACGGCCGCGCCTGTGCCCCCCCAGGCCCGCCCCGGCTCTCGGTGACGCCCCGCGTTTCGGGTCTCCAGCGCAGCCAGGAGAGGAGCCAGGAGCCCCTGCCCCGCGACAGCCTGCTGCTCACCGGCCCCCTGtccatctccctccctcacccccATCCCGCCCCCTCCGCCAGTGCCGCCGCCGCCTCCTCCACCTCCGCCCCCCAGGCCCTGCCGCCCCGCGCCCTCCCCCGCCCCCGCCACACGCCCTCCCCCGCACCCCCTGCCGCCCTACCCCAGCTCACCTGCGAAGGCCACCCAGCCTCCCAcgcccccagccccccccagcCCAAGAACAAACCTCCTTCCCTGTCcttccccaaccccccccaGTCAGTGTACAGTAGCGGTCTAGGCCTCAACAACGTCAGgAGCACTACTCCTGCCAGGCCACCCTCTTCCTCCCAGCCCCCGTCTCGCCGCCCCACCACCCCCTCCTCTGGCCTGGCCCTGTCTCTGGGCACCCCCGGTGGCCCCCCGTCCACCCACGGCTACCCCGGCGCCCTGCGGCCCCCCTCGCACCCGGGCACTGGGGCGGCCGGCCTGTTCACCTCATCCCCAGGCCTGCCGCCTCCCCCGCCGCTGCTGCAGGTGCCCAGCCACGCGGCCTCTGCCAACACGGCGGCGGCCTTCACAGagCAGGACCTGTTACGTCAGGAGCTGAACTCGCGCTTCCTGACCTCCCAGAATGCGGGGTCTCGCAGTGGGGGGGACAGCGCGGGGGGCGCAGGGGCAGCGGAGGGCCGGGCCGGGGCGTCATCGGGGGGCTCGGCGTCCGGCGGCACCCCTGGCTCCGGTACCGGCGCCTCCTCGGCCCAGCCCGCCATCCCTCACCTGGCCTTCCAGTTCCACCAGCACAaccaccagcaccagcacaCCCACACCCACCAACACTTCACGCCCTTCCTGGCACCGCCCGCTGCAGCGCCCCCTCTGttcgaCAAGTACCCAGGGAAGATGGATGGGCTGTACCGACACACTTTCTACCCCCCCTACACCCCCTCTGTGCCCGGGATCCCGCCCGTGCTGCCCCCAGCTGGGCCCTTCAGCTCACTGCAAGGAGCATTTCAGCCTAAGGCAACCAATCCAGAGATGGCAGCTCGCCTGGGGGCGGTCCCTCACCCGCTGCAGCCCAAAGACCCCCGGCTGACTGACCCATTCAGGACATCTCTGCGAGTCAGTAATAAGCCGGGGAAGTGGTGTGCTATGCACGTACGGGTGGCCTGGATGATCCTCCGACACCAGGAGAAAGTCAAGATGCAGGCTGATCCTCACAAGCTGGACTTCCGCAGTGACCTGCTGGCTCGACTTCCTGGGGCGGGGGGCCTGGGGGGGCTCGGGGGGCTGCCCCGGCCTGCCCTCTTCACTGCTGCTGGAGGAGTCCATCCAAACTCCTCCCCATTTGCCCCTCCCTCAGGACCGCACTCCAACTTCCTCACCCCATCTCACCTGGatCCCTTTGGCCGCTCTCCATCCTTCACACCGCTGGGCGCTCTGGGGAACGGGGCGTTCGGCGGCCTGGGCAGCCCCACACTGGGAGCCAGCTCCATGTTCGGACACAAGGAGTCCCCGGGGGGGCCGGCTGCGAGCTTCGCCAACCCCCACGACCCCTGGAACCGGCTGCATCGCACCCCGCCTTCCTTCCCCACCGCCCCCGCCTGGAGCAAGGGCCCAGACAGCGAAAGGGAGCGTGATCGCGAGCgggagcgggagagggagcGTGATCGCGAGCgggagcgggagagggagagggagcgcgagcgggaaagagagagggaacgGGAGCGTGAACGAGAGAGGGAGCGTGAACGAGAGAGGGAGCATGAACGAGACAATGAAAAGAGAGAGATCCCCCTCATCAAGGACGAGAAGGATCGCGACAGCTCCGCCTACGGCCGCCACCCCGTCAGGATGTCGCCGGCCGCCCAGCCTCCCCGGCTGCCCCCCCAGCACAAGTCGAGCCACGTCTCCCACAGCAATGGCCACGCTGCGGGAGGAGGGGCCCCGGAGGACGATGCCCCCCGAGCACAGAGCCGGGAGCGGGAGAGGGACCGAGACCGGGACAGGGATGGTCGCCAGTCTGCCTCCGCCCCCAGGCCGCTGCCCCTGCCCCCAGACCGGccccgctcctcctcctccgcctcctcctgcGCCCCCACCCCGGCCGCCGAGCCCTCGCGGCCCCCCAGCAACCCACCGCGGCCCCCTCCCAGGGAGAACGGCTGCCCCCCCAACCTGCCCCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169392 lncRNA downstream 72963 12118340 ~ 12118592 (-) True G134936
TU169351 lncRNA downstream 173997 12014352 ~ 12017558 (-) True G134899
TU169296 lncRNA downstream 423601 11744894 ~ 11767954 (-) True G134855
TU169293 lncRNA downstream 425139 11766072 ~ 11766416 (-) True G134853
TU169288 lncRNA downstream 531250 11659721 ~ 11660305 (-) True G134849
TU169465 lncRNA upstream 52804 12266603 ~ 12266826 (-) True G135002
TU169471 lncRNA upstream 148736 12362535 ~ 12362840 (-) True G135008
TU169716 lncRNA upstream 352874 12566673 ~ 12589807 (-) True G135148
TU169707 lncRNA upstream 354452 12568251 ~ 12716110 (-) False G135146
TU169728 lncRNA upstream 365066 12578865 ~ 12632059 (-) False G135151
AMCG00012176 mRNA downstream 5729 12181113 ~ 12185826 (-) True AMCG00012176
AMCG00012175 mRNA downstream 11819 12153169 ~ 12179736 (-) True AMCG00012175
AMCG00012169 mRNA downstream 44644 12142510 ~ 12146911 (-) True AMCG00012169
AMCG00012170 mRNA downstream 68830 12109540 ~ 12122725 (-) True AMCG00012170
AMCG00012171 mRNA downstream 84141 12101244 ~ 12107414 (-) False AMCG00012171
AMCG00012173 mRNA upstream 9495 12223294 ~ 12226142 (-) True AMCG00012173
AMCG00012180 mRNA upstream 54426 12268225 ~ 12279242 (-) True AMCG00012180
AMCG00012179 mRNA upstream 105102 12318901 ~ 12340418 (-) True AMCG00012179
AMCG00012183 mRNA upstream 190193 12403992 ~ 12423343 (-) True AMCG00012183
AMCG00012184 mRNA upstream 220697 12434496 ~ 12440472 (-) True AMCG00012184
TU169390 other downstream 71923 12119280 ~ 12119632 (-) False AMCG00012170
TU169384 other downstream 89582 12074004 ~ 12101973 (-) True AMCG00012171
TU169224 other downstream 804576 11330466 ~ 11386979 (-) True G134803
TU169020 other downstream 1229684 10934932 ~ 10961871 (-) False AMCG00012111
TU168910 other downstream 1379674 10729775 ~ 10811881 (-) True G134581
TU169444 other upstream 7406 12221205 ~ 12223185 (-) True G134981
TU169690 other upstream 419955 12633754 ~ 12960922 (-) False G135146
TU169730 other upstream 488651 12702450 ~ 12703485 (-) True G135152
TU169700 other upstream 666494 12880293 ~ 12990631 (-) False G135146
TU169712 other upstream 666494 12880293 ~ 13426065 (-) False G135146

Expression Profile