RNA id: AMCG00012183


Basic Information

Item Value
RNA id AMCG00012183
length 1422
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00012183
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12403992 ~ 12423343 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCATGGAGAGGAGCGGACTGGCTGTCTTTCTGGTGGCAGAGAGGAAGTCACCTTCTACAACTGGAGGAATAACAGGTTCTGTGCTAAAGTTAATGCTGAAGGCACCTGGGAGGATGATGTCTGTGACCAGACACACTTTTTCATGTGCTACACAGCATATTATTTTCACCACTGGAACTATGGACAGCCAAACTTTTATGAAGGGAAGCAGAAATGTGTGGAGATGTTTTTCAACAATTTGGGGCAAGGCAGATGGAATGATCAGAACTGCGCTGAGAGGCGGCCCTTTCTCTGCAGCTACGACAAACGAGAGTTAATCCTGGTCAGGGAGAACAAGTCATGGGAGGAGGCTCTGGATTACTGCCACTCTTACTACACTGACCTCGTCAGCATCATCTCAGAGAAGGAGCACAAGCTAACAGCTCTGACTGCCACAGACGCCCAGACCCCCCACGTCTGGCTGGGCCTTAGGCAGAGCTTCATAACCCACTCCTGGTTCTGGGTGAACAGGGAGGTCCTGGGATACCAAAAGTGGGTCCAGGCAGGGCAGCCCCAGTGCCCCCAGTCCAGATACTGTGGAGCCATGTCCACTACTACTGAGGACCATGCCTGGACTGACCGGCCCTGTGAGGAGAAGCTCAACTTCATCTGCTACAGAGAGGCACAGAAATACTGCAGAGCTGAGAACAAAGACCTGGCCACCATTTACACAGAGGCAGAGGCTAGGCAGCTTACAGAGGTTCTAGGCATTGCTTCTGACACCTGGATTGGGCTGTACCATGGCCCAGAAAACTGGCAGTGGGTCAGTGGAGAGAGGGCCAGCTATGCCAACTGGAAGACTAATCTATTCTGTGCTGCAGTGGATTCTGAAGGGTACTGGGAGGATTTAGTCTGTGATGAGCAGCACCCTTTCATGTGCTACACAGATGGGGCAACATTATCCTATCGAAACTGGTGTGAAATGGAGCCAAACAACTTTTACTACAATGAGAAATGTGGAGGGTTGCAAACAACTGGCAAATGGTTTGACATTCACTGTAACATGAACCTGCCATTCTTGTGCCAGGAAGAGAAGGAGCACAAGCTAACAGCTCTGACAGCCATAGACGCCCAGACCCCCCACGTCTGGCTGGGCCTGAGGCAGAGCTTCATAACCCGCTCCTGGTTCTGGGTGAACAGGGAGGTCCTGGGGTACCAAAAGTGGGTCCAGGCAGGGCAGCCCCAGTGCCCCCAGTCAAGATACTGTGGAGCTACATCCACTACTACTGAGGACCACGCCTGGACTGACCGGCCCTGTGAGGAGAAGCTCAACTTCATCTGCTACAGAGATACACCAATCACAGAGCTGCCTGGCTGTGGAgagctgctggagctgcagaTGCTATGCCATTGTGGTGGGGGGTCACTGGAGTCGCACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169471 lncRNA downstream 41152 12362535 ~ 12362840 (-) True G135008
TU169465 lncRNA downstream 137166 12266603 ~ 12266826 (-) True G135002
TU169392 lncRNA downstream 285400 12118340 ~ 12118592 (-) True G134936
TU169351 lncRNA downstream 386434 12014352 ~ 12017558 (-) True G134899
TU169296 lncRNA downstream 636038 11744894 ~ 11767954 (-) True G134855
TU169716 lncRNA upstream 143330 12566673 ~ 12589807 (-) True G135148
TU169707 lncRNA upstream 144908 12568251 ~ 12716110 (-) False G135146
TU169728 lncRNA upstream 155522 12578865 ~ 12632059 (-) False G135151
TU169725 lncRNA upstream 158412 12581755 ~ 12629803 (-) False G135151
TU169720 lncRNA upstream 190911 12614254 ~ 12629803 (-) True G135151
AMCG00012179 mRNA downstream 63574 12318901 ~ 12340418 (-) True AMCG00012179
AMCG00012180 mRNA downstream 124750 12268225 ~ 12279242 (-) True AMCG00012180
AMCG00012173 mRNA downstream 177850 12223294 ~ 12226142 (-) True AMCG00012173
AMCG00012174 mRNA downstream 192037 12190015 ~ 12211955 (-) False AMCG00012174
AMCG00012176 mRNA downstream 218166 12181113 ~ 12185826 (-) True AMCG00012176
AMCG00012184 mRNA upstream 11153 12434496 ~ 12440472 (-) True AMCG00012184
AMCG00012185 mRNA upstream 60185 12483528 ~ 12504505 (-) True AMCG00012185
AMCG00012188 mRNA upstream 210394 12633737 ~ 12641612 (-) True AMCG00012188
AMCG00012196 mRNA upstream 276267 12699610 ~ 12700730 (-) True AMCG00012196
AMCG00012195 mRNA upstream 297894 12721237 ~ 12756347 (-) True AMCG00012195
TU169444 other downstream 180807 12221205 ~ 12223185 (-) True G134981
TU169437 other downstream 190193 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other downstream 190193 12202762 ~ 12213799 (-) False AMCG00012174
TU169390 other downstream 284360 12119280 ~ 12119632 (-) False AMCG00012170
TU169384 other downstream 302019 12074004 ~ 12101973 (-) True AMCG00012171
TU169690 other upstream 210411 12633754 ~ 12960922 (-) False G135146
TU169730 other upstream 279107 12702450 ~ 12703485 (-) True G135152
TU169700 other upstream 456950 12880293 ~ 12990631 (-) False G135146
TU169712 other upstream 456950 12880293 ~ 13426065 (-) False G135146
TU169749 other upstream 471825 12895168 ~ 12911887 (-) True G135164

Expression Profile