RNA id: AMCG00012186



Basic Information


Item Value
RNA id AMCG00012186
length 919
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00012186
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12588930 ~ 12591372 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTTTCTTCACCTGGGTACAGGGCTTTCTGAGACACTGCTCTCCAGCTGGGATTGGCCTgcgagtctgtctgtctgtcccaggGATGAAGTCTGACCAATCAGAGTGGTTCTGTGTGATTGTCCTGCTGCTCCAGCAGACCTCAGTGTCAGGATCAGAGAGGTTTGAGGTTCTTGGCCCACGTTACCCCATGGCTGTTTACCCTGGAGAAGACACTGTTCTGCCCTGTTACCTctcacccaacatcagtgctGAGGACATGGAGATCAGGTGGTTCAGAGAAGACCCCTTTTCCCCTGTCTGTTTGTACCAGTATGGCCGGTATGACTTTGAGGAGCAGATCCCATCCTACAAGGGCAGGGCTGAGCTTTTCCCAGAGGAGTTCAGGAAAGGCAACGTGTCTCTGAGACTGAAGGATATTCGCGGCTCTGATGATGGGCGGTACAACTGTCTGGTCCAGTCTGCAAAGGCTCTTATTGATGTGGTTGTCAGAGGTCAGTCCTCAGTGTCCCTCCACTCTGAAGGAGGTCAGACCCGACTGGAGTGCAGGTCAGAGGGCTGGTACCCTGAGCCTGCAGTGATCTGGACAGACAGGGACGGACACGACGTCACATCACTGTCCAACACCACAGTGGAGGCAGACAGTCGGGGTCTTCACACTGTCAGCAGCTTCATCCCAGTCAAACAGGAGTCCAATGTCTTTACCTGCCTGATTAGACATGCAGTACCTGAAGCAGACTGGGAACCGCAACTCCATATACCCAGGGACTTCTTCCCTGACCCCTCTGGGTGGATGGTGTCTTTATTCCTAATGGCCGCTCTCACTGTGGCAGCAGCTGCTCTTCTGGTGATCCAGTGGAGACGAATGGACAGTGAGTAATCGGTATACAGGTGTTAAGactggtttaaaatataattat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169470 lncRNA upstream 226087 12362545 ~ 12362843 (+) True G135007
TU169468 lncRNA upstream 228613 12359997 ~ 12360317 (+) True G135005
TU169406 lncRNA upstream 424734 12163655 ~ 12164196 (+) True G134948
TU169405 lncRNA upstream 425367 12163256 ~ 12163563 (+) True G134947
TU169404 lncRNA upstream 426632 12161458 ~ 12162298 (+) True G134946
TU169519 lncRNA downstream 20793 12612165 ~ 12648613 (+) True G135030
TU169488 lncRNA downstream 22601 12613973 ~ 12648812 (+) False G135025
TU169489 lncRNA downstream 22601 12613973 ~ 12646080 (+) False G135025
TU169515 lncRNA downstream 45327 12636699 ~ 12699876 (+) True G135027
TU169508 lncRNA downstream 61923 12653295 ~ 12716115 (+) False G135026
AMCG00012190 mRNA upstream 19930 12566641 ~ 12569000 (+) True AMCG00012190
AMCG00012189 mRNA upstream 40286 12541835 ~ 12548644 (+) True AMCG00012189
AMCG00012187 mRNA upstream 60015 12517368 ~ 12528915 (+) True AMCG00012187
AMCG00012182 mRNA upstream 135253 12449711 ~ 12453677 (+) True AMCG00012182
AMCG00012181 mRNA upstream 185726 12398604 ~ 12403204 (+) True AMCG00012181
AMCG00012198 mRNA downstream 29639 12621011 ~ 12623081 (+) True AMCG00012198
AMCG00012192 mRNA downstream 59781 12651153 ~ 12654316 (+) True AMCG00012192
AMCG00012191 mRNA downstream 123624 12714996 ~ 12721624 (+) False AMCG00012191
AMCG00012193 mRNA downstream 166649 12758021 ~ 12758746 (+) True AMCG00012193
AMCG00012194 mRNA downstream 171252 12762624 ~ 12763676 (+) True AMCG00012194
TU169428 other upstream 396522 12191555 ~ 12192408 (+) True G134968
TU169416 other upstream 407610 12181061 ~ 12181320 (+) True G134958
TU169413 other upstream 416128 12172538 ~ 12172802 (+) True G134955
TU169350 other upstream 557440 12030897 ~ 12031490 (+) True G134898
TU169151 other upstream 1142767 11436379 ~ 11446163 (+) True G134743
TU169491 other downstream 22601 12613973 ~ 12646572 (+) True G135025
TU169498 other downstream 49472 12640844 ~ 12716115 (+) False G135026
TU169493 other downstream 59267 12650639 ~ 12716115 (+) False G135026
TU169494 other downstream 117518 12708890 ~ 12716115 (+) False G135026
TU169504 other downstream 123624 12714996 ~ 12716115 (+) False G135026

Expression Profile