RNA id: AMCG00012188


Basic Information

Item Value
RNA id AMCG00012188
length 969
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00012188
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12633737 ~ 12641612 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTTGCTGTTTCCTTAGTTCTTCTTCACCTGAGTACAGGGCTCTCTGAGACACTGCTCTCCAGCTGGGATTGGCCTGCgaggctgtctgtctgtcccaggGATGAAGTCTGACCGATCAGAGTGGCTCTGTGTGATTGTCCTGCTGCTCCAGCAGACCTCAGTGTCAGGATCAGAGAGGTTTGAGGTTCTTGGTCCACGTTACCCCATTGCTGTTTCCCCTGGAGAAGACGCTGTTCTGCCCTGTTACCTCTCACCCAACATCAGCGCTGAGGGCCTGGAGATCAGGTGGTTCAGAGAGGATTACACAGTCCCTGTCTGTTTATATCTGTATGGCCGGTATGACTTTGCTAATCAGATGCAGTCCTACAAGGGCAGGGCTGAGCTTTTCCCAGAGGAGTTCAGGAAAGGCAACGTGTCCCTGAGACTGAAGGATGTGCGCGGCTCTGATGATGGACAGTACAGATGTGCAGTGTATTCTGAACGGTGGGAAGAAGACGCTCTTATTGATGTGGCTGTCAGAGGCCAGTCCTCAGTGTCCCTCCACTCTGAAGGAGGTCAGACCCGGCTGGAGTGCAGGTCAGATCGGTACCCTGAGCCTGCAGTGATCTGGACAGACAGGGACGGACACGACGTCACAACACTGTCCAGGACACGACTGGAGAGGGACAGTCAGGGGCATCTCACTGTCAGCAGCTCCATCCCAGTCAGACAGGAGTCCAATGTCTTCACCTGCCTGGTGAGAAGTACAGTACCTGAAGCAGACTGGGAACCACAACTCCACATAACCAGGGACTTCTTCCCTGACCCCTCTGGGTGGATGGTGTCTTTATTCCTAATGGTCGCTCTCACTGTGGCAGCAGCTGGGTTTCTGCTGATCCAGTGGAGACGAATGGACAACAAGGAGAGACTGTGTGAATCTAAAGGAGAACAGAGCATTGCCCCTAAGTCAGGTCTGTACACTGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169728 lncRNA downstream 1678 12578865 ~ 12632059 (-) False G135151
TU169725 lncRNA downstream 3934 12581755 ~ 12629803 (-) False G135151
TU169720 lncRNA downstream 3934 12614254 ~ 12629803 (-) True G135151
TU169722 lncRNA downstream 18411 12614254 ~ 12615326 (-) False G135151
TU169716 lncRNA downstream 43930 12566673 ~ 12589807 (-) True G135148
TU169709 lncRNA upstream 45414 12687026 ~ 12701115 (-) False G135146
TU169738 lncRNA upstream 122960 12764572 ~ 12802068 (-) True AMCG00012197
TU169743 lncRNA upstream 151336 12792948 ~ 12840313 (-) True G135160
TU169746 lncRNA upstream 222248 12863860 ~ 12952125 (-) True G135161
TU169763 lncRNA upstream 446233 13087845 ~ 13101480 (-) True G135172
AMCG00012185 mRNA downstream 129232 12483528 ~ 12504505 (-) True AMCG00012185
AMCG00012184 mRNA downstream 193265 12434496 ~ 12440472 (-) True AMCG00012184
AMCG00012183 mRNA downstream 210394 12403992 ~ 12423343 (-) True AMCG00012183
AMCG00012179 mRNA downstream 293319 12318901 ~ 12340418 (-) True AMCG00012179
AMCG00012180 mRNA downstream 354495 12268225 ~ 12279242 (-) True AMCG00012180
AMCG00012196 mRNA upstream 57998 12699610 ~ 12700730 (-) True AMCG00012196
AMCG00012195 mRNA upstream 79625 12721237 ~ 12756347 (-) True AMCG00012195
AMCG00012197 mRNA upstream 126238 12767850 ~ 12776922 (-) False AMCG00012197
AMCG00012201 mRNA upstream 165350 12806962 ~ 12825753 (-) True AMCG00012201
AMCG00012202 mRNA upstream 218149 12859761 ~ 12886799 (-) True AMCG00012202
TU169444 other downstream 410552 12221205 ~ 12223185 (-) True G134981
TU169437 other downstream 419938 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other downstream 419938 12202762 ~ 12213799 (-) False AMCG00012174
TU169390 other downstream 514105 12119280 ~ 12119632 (-) False AMCG00012170
TU169384 other downstream 531764 12074004 ~ 12101973 (-) True AMCG00012171
TU169730 other upstream 60838 12702450 ~ 12703485 (-) True G135152
TU169700 other upstream 238681 12880293 ~ 12990631 (-) False G135146
TU169712 other upstream 238681 12880293 ~ 13426065 (-) False G135146
TU169749 other upstream 253556 12895168 ~ 12911887 (-) True G135164
TU169761 other upstream 440609 13082221 ~ 13101480 (-) False G135172

Expression Profile