RNA id: TCONS_00009291


Basic Information

Item Value
RNA id TCONS_00009291
length 1898
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id XLOC_004689
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20806897 ~ 21106987 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTCACCTTCACAGGTCAGGGATCATGAACCCAAACACCCCTGCTGATTACCCTTCAGGCCACACGAGGGCGGTGTAAGGGCATCCCAGATGTCTTCGTTGCCAGCCTGCCAAACACGCGTTATCGACACTGCAGCTGGTGATGATGATGGATCCTCTCCTGATTCTGTGGCCCTCCTGCATGGATGAATCCTGGAGAACTGTAAATGAGGACAGGCATATGCCATTTTCATTGTAGCTGTTTGAAACACATGCTCAACCTTCATTGCTGACACCTTGGTGAACTGATGACTGATCATTTCTGAAGAAATTCATGGAGGTTTGGAACTTacataaggTGTGTCTGCCATAATGTGGGCAGGAAGTGTGCATCCTGGCTGTGGCTGTAGCTGATTGTGCTGATAATGCACTCATGATGATTTCTGCTGAACACGCTGATGTGCTTGTCAGAAGGGTCGTCCATGTTTCTCAGCTTCGGTGGAGGAACAAACACAGCCAGCTCGCTCTCCGtacaaacacaactaattttaaTCTTGACAAGAGTCTTGGTTTTTATTCTGCTACACTTTCACTCACTCCCACCCTAACCTCCTCTTTATCATTTAAAATTGATGCCAACTCCCCAATGGCCTTTCTTATGGAAGCAAAGAGACTTTGAAGTTTGGAGGACTCCTCTGAAAAGCCCTCAGGCGTCTCCTTCACAAGGCTACTGCTACCATACACCACTAGatctcatttttttctttttcttttggccACTCTGGATCATGAGAGAATTCTCTGCTACTGCAGCACAATGAATAGCAAACAAAAGTTGAGAAAGGGCATGTCAACAATTTTAGACGATGGAGGATTGCGGGAAGAAGTAATAAAAGCACATGCATTTCATATACAATAAAACCCTGGCTTCAAAGcaaaacttttaaatatttaaaagcatatgtttctGTCTGAATGTAAACAGATATGCTAAATATTTTAGTCGAATGACGCATTTTGGTTTTCCCTTTTGAGAAGTTTAATGCAGTTTTCTTGTTAACAGTAAATATGCATTTTGTCATATGGTGTACATTATATTCAGTGTTTTCCATCTGTGGCTGTGTTTCCACCTGGTATTAACATATGTTTTCAGTCATCTGGTCACAAGCAAGCTGAGATGTTTTACTGTTTTCATTTGGTATTTGCATGTATTCCAATGCATCGCGTGTTACCACAAATGTTTGGATTTCCATCAAAATTCTTCCCCCGTTTTCCATCACACTCTTCATCACTTTTGACTAAGGGCTCAGTGTGATgaatcaaaactactaaataaaCAGACCCATGTTCAGAGTTGGTATGGGAGCTTGAAATCCTTGAAAATGCTTATATTTAATCTAGTgttttcaaggttttaaaattgcttagattttggaaaaaaaagtgcttgaaagtgtttaaaagtgCAATTGTAATAGTTCAATTTGTTGCTTTAACCCTGAAACTACCAGAATTCTTTATACTAAAATTGCCATGCTGGTCACATTATCtttacattcaaagcttttaTTGAGATATAAAAATTAAGCTTGTGTCTGTAAAATGTGTGTGCTTGTACATGTTTGTTGCCATATTCAGTCAAGTCATCACCCTAAATATACAATCTTTTTGGTGATACAGCCTATAAATGTATAGTTAAGCTACGTTAGACCACCCGCTAACGTCCATGCCTCACTGTCTTAAGCACGTGAGAAGGCTTTTTGGCGGATGTGCCAtttctgaagtaaacttatgatTTTGGCAacagaaagttatgtttttgttggCAGGAAGAAGGGCTGAACAATGTatcgtttgagcattgatattgcaatgtgtgtattcgcaatagtcacatcgaaggattagatttattaaaag

Function

GO:

id name namespace
GO:0006892 post-Golgi vesicle-mediated transport biological_process
GO:0033036 macromolecule localization biological_process
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0005798 Golgi-associated vesicle cellular_component
GO:0031982 vesicle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010921 lncRNA upstream 42724 20721097 ~ 20764173 (+) True XLOC_004688
TCONS_00009278 lncRNA upstream 185797 20620199 ~ 20621100 (+) True XLOC_004684
TCONS_00010920 lncRNA upstream 302096 20491619 ~ 20504801 (+) False XLOC_004679
TCONS_00010918 lncRNA upstream 306333 20491619 ~ 20500564 (+) False XLOC_004679
TCONS_00010924 lncRNA downstream 871335 21757817 ~ 21799396 (+) False XLOC_004694
TCONS_00010925 lncRNA downstream 904497 21790979 ~ 21799396 (+) False XLOC_004694
TCONS_00010926 lncRNA downstream 1131464 22017946 ~ 22019770 (+) True XLOC_004695
TCONS_00010734 lncRNA downstream 1372480 22258962 ~ 22259398 (+) False XLOC_004696
TCONS_00010927 lncRNA downstream 1403498 22289980 ~ 22304841 (+) True XLOC_004696
TCONS_00009289 mRNA upstream 21748 20699534 ~ 20785149 (+) False XLOC_004688
TCONS_00009290 mRNA upstream 21934 20700961 ~ 20784963 (+) False XLOC_004688
TCONS_00009288 mRNA upstream 106025 20693866 ~ 20700872 (+) False XLOC_004688
TCONS_00009285 mRNA upstream 107714 20691310 ~ 20699183 (+) False XLOC_004688
TCONS_00009287 mRNA upstream 107715 20693743 ~ 20699182 (+) False XLOC_004688
TCONS_00009292 mRNA downstream 411835 21298317 ~ 21553637 (+) False XLOC_004690
TCONS_00009293 mRNA downstream 412856 21299338 ~ 21549134 (+) False XLOC_004690
TCONS_00009294 mRNA downstream 412860 21299342 ~ 21322436 (+) False XLOC_004690
TCONS_00009296 mRNA downstream 639014 21525496 ~ 21549147 (+) True XLOC_004690
TCONS_00009297 mRNA downstream 797757 21684239 ~ 21688087 (+) True XLOC_004692
TCONS_00009286 other upstream 114884 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009270 other upstream 307817 20498983 ~ 20499080 (+) True XLOC_004679
TCONS_00009249 other upstream 902482 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009250 other upstream 909970 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009245 other upstream 1418624 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009295 other downstream 550864 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009299 other downstream 907520 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009304 other downstream 1557147 22443629 ~ 22444772 (+) True XLOC_004697
TCONS_00009307 other downstream 1691922 22578404 ~ 22578530 (+) True XLOC_004700
TCONS_00009313 other downstream 1771441 22657923 ~ 22661380 (+) False XLOC_004703

Expression Profile

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