RNA id: AMCG00012192



Basic Information


Item Value
RNA id AMCG00012192
length 953
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00012192
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12651153 ~ 12654316 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAGTCTGACCAATCAGAGTGGCTCTGTGTGATTGTCCTGCTGCTCCAGCAGACCTCAGTGTCAGGATCAGAGAGGTTTGAGGTTCTTGGTCCAGCTGATCCCATTTCTGTTTACCCTGGAGAAGACGCTGTTCTGCCCTGTTACCTctcacccaacatcagtgctGAGGGCCTGGAGATCAGGTGGTTCAGAAAAGATCACTCAGCCCCTGTCTGTTTATACTGGAACAGCCAATATGACGTTGCTAATCAGATCCCGTCCTACAAGGGCAGGGCTGAGCTTTTCCCAGAGGAGTTCAGGAACGGCAACGTGTCTCTGAGACTGAAGGATGTGCGCAGCTCTGATGATGGGCGGTACAACTGTCTGGTCCAGTCTGCAGACATTTATGAAGAGGCTCTTACTGATGTGGTTGTCAGAGTGTCCCTCCACTCTGAAGGAGGTCAGAGCTGGCTGGAGTGCAGGTCAGAGGGCTGGTACCCTGAGCCTGCAGTGATCTGGACAGACAGGGACGGACACGACGTCACATCACTGTCCAACACCACAGTGCAGAGAGACAGTCAGGAGCGTCTCAGTCTGAGGAGCTTCATCCCAGTCAGACAGGAGTCCAATGTCTTCACCTGCCTGATTAGAAGTGCAGTACCTGAACCAAACTGGGAACCACAACTCCACATACCCAGGGACTTCTTCCCTGACCCCTCTGGGTGGATGGTGTCTTTATTCCTAATGGCAGCGCTCAGTGTGGCAGTAGCTGCTCTTCTGGTGATCCAGTGGAGACAAATGGACAGTGAGTGATCAGTGTTCATGTGTTAGAAcctgttaaaaaacaatatgacaTCTTACATTTTCCCAGTGCACCatagtccagtcagtgtgttgAGAGCTGTTGATTGCGGGGAAGCATGTTCTCAAGCTAGGGTTTGCTGGAACATGTTTATTGAGTAACAGACGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169488 lncRNA upstream 2341 12613973 ~ 12648812 (+) False G135025
TU169519 lncRNA upstream 2540 12612165 ~ 12648613 (+) True G135030
TU169489 lncRNA upstream 5073 12613973 ~ 12646080 (+) False G135025
TU169511 lncRNA upstream 19093 12566212 ~ 12632060 (+) False G135026
TU169497 lncRNA upstream 19343 12588024 ~ 12631810 (+) False G135026
TU169517 lncRNA downstream 38352 12692668 ~ 12693815 (+) True G135028
TU169522 lncRNA downstream 48007 12702323 ~ 12724194 (+) True AMCG00012191
TU169523 lncRNA downstream 65546 12719862 ~ 12721164 (+) True G135033
TU169528 lncRNA downstream 129772 12784088 ~ 12786060 (+) True G135038
TU169539 lncRNA downstream 181936 12836252 ~ 12840315 (+) True G135045
AMCG00012198 mRNA upstream 28072 12621011 ~ 12623081 (+) True AMCG00012198
AMCG00012186 mRNA upstream 59781 12588930 ~ 12591372 (+) True AMCG00012186
AMCG00012190 mRNA upstream 82153 12566641 ~ 12569000 (+) True AMCG00012190
AMCG00012189 mRNA upstream 102509 12541835 ~ 12548644 (+) True AMCG00012189
AMCG00012187 mRNA upstream 122238 12517368 ~ 12528915 (+) True AMCG00012187
AMCG00012191 mRNA downstream 60680 12714996 ~ 12721624 (+) False AMCG00012191
AMCG00012193 mRNA downstream 103705 12758021 ~ 12758746 (+) True AMCG00012193
AMCG00012194 mRNA downstream 108308 12762624 ~ 12763676 (+) True AMCG00012194
AMCG00012199 mRNA downstream 133084 12787400 ~ 12788020 (+) True AMCG00012199
AMCG00012200 mRNA downstream 136211 12790527 ~ 12799451 (+) True AMCG00012200
TU169491 other upstream 4581 12613973 ~ 12646572 (+) True G135025
TU169428 other upstream 458745 12191555 ~ 12192408 (+) True G134968
TU169416 other upstream 469833 12181061 ~ 12181320 (+) True G134958
TU169413 other upstream 478351 12172538 ~ 12172802 (+) True G134955
TU169350 other upstream 619663 12030897 ~ 12031490 (+) True G134898
TU169494 other downstream 54574 12708890 ~ 12716115 (+) False G135026
TU169504 other downstream 60680 12714996 ~ 12716115 (+) False G135026
TU169527 other downstream 116467 12770783 ~ 12777157 (+) True G135037
TU169530 other downstream 130892 12785208 ~ 12786060 (+) False G135038
TU169576 other downstream 314061 12968377 ~ 12974053 (+) True G135070

Expression Profile