RNA id: TU169719


Basic Information

Item Value
RNA id TU169719
length 205
lncRNA type read_through
GC content 0.54
exon number 2
gene id AMCG00012196
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12637093 ~ 12700730 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAAGCAGATCCCATCCTACAAGGGCAGGGCTGAGCTTTTCCCAGAGGAGTTCAGGAACGGCAACGTGTCTCTGAGACTGAAGGATGTGCGCGGCTCTGATGACGGGCGGTACATGTGTCTGGTCCAGTCTGCAGACTTGTATGAAGAGGCTCTTATTGATGTTGTTGTCAGAGGCCGGCCCTCAGTGTCCCTCCACTCTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169728 lncRNA downstream 5034 12578865 ~ 12632059 (-) False G135151
TU169725 lncRNA downstream 7290 12581755 ~ 12629803 (-) False G135151
TU169720 lncRNA downstream 7290 12614254 ~ 12629803 (-) True G135151
TU169722 lncRNA downstream 21767 12614254 ~ 12615326 (-) False G135151
TU169716 lncRNA downstream 47286 12566673 ~ 12589807 (-) True G135148
TU169738 lncRNA upstream 64016 12764572 ~ 12802068 (-) True AMCG00012197
TU169743 lncRNA upstream 92392 12792948 ~ 12840313 (-) True G135160
TU169746 lncRNA upstream 163304 12863860 ~ 12952125 (-) True G135161
TU169763 lncRNA upstream 387289 13087845 ~ 13101480 (-) True G135172
TU169778 lncRNA upstream 449959 13150515 ~ 13214542 (-) True G135184
AMCG00012185 mRNA downstream 132588 12483528 ~ 12504505 (-) True AMCG00012185
AMCG00012184 mRNA downstream 196621 12434496 ~ 12440472 (-) True AMCG00012184
AMCG00012183 mRNA downstream 213750 12403992 ~ 12423343 (-) True AMCG00012183
AMCG00012179 mRNA downstream 296675 12318901 ~ 12340418 (-) True AMCG00012179
AMCG00012180 mRNA downstream 357851 12268225 ~ 12279242 (-) True AMCG00012180
AMCG00012195 mRNA upstream 20681 12721237 ~ 12756347 (-) True AMCG00012195
AMCG00012197 mRNA upstream 67294 12767850 ~ 12776922 (-) False AMCG00012197
AMCG00012201 mRNA upstream 106406 12806962 ~ 12825753 (-) True AMCG00012201
AMCG00012202 mRNA upstream 159205 12859761 ~ 12886799 (-) True AMCG00012202
AMCG00012205 mRNA upstream 202701 12903257 ~ 12923677 (-) True AMCG00012205
TU169444 other downstream 413908 12221205 ~ 12223185 (-) True G134981
TU169437 other downstream 423294 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other downstream 423294 12202762 ~ 12213799 (-) False AMCG00012174
TU169390 other downstream 517461 12119280 ~ 12119632 (-) False AMCG00012170
TU169384 other downstream 535120 12074004 ~ 12101973 (-) True AMCG00012171
TU169730 other upstream 1894 12702450 ~ 12703485 (-) True G135152
TU169700 other upstream 179737 12880293 ~ 12990631 (-) False G135146
TU169712 other upstream 179737 12880293 ~ 13426065 (-) False G135146
TU169749 other upstream 194612 12895168 ~ 12911887 (-) True G135164
TU169761 other upstream 381665 13082221 ~ 13101480 (-) False G135172

Expression Profile