RNA id: AMCG00012199


Basic Information

Item Value
RNA id AMCG00012199
length 621
RNA type mRNA
GC content 0.66
exon number 1
gene id AMCG00012199
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12787400 ~ 12788020 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCACCCATCTCACCGACAGGCCCCAGGCCGTGGCCATCCCTGTTTCAGATTGTCCCCCGGATCCCACTGCTACTGCCTCCGATGCTACTGCCTCCGATGCCGCcgccaccaccatcaccaccaccacccttcCTCAGTTCTCCTGCCAGCAGTGTGAGTTTGTCTTCAGCAGCTGGGCCGACCTCCACTCCCATGAGGCCCTTCACCCGTCCCCGGGGCCAGAGAGCACGGGGACCCACACCTGCGCCACCTGCCAGGCAGCCTTCTCCACCCTGGCAGAGCTGCGGGCACACGAGAAATCTCACCCGCAGGCGCGCCCCCATACCTGCGCCCAGTGCAACAAGGGCTTCCTGAACAAGGCCGGCCTACGCAAGCACGAGCGGATCCACTCGACCAACCGGCCGCACACCTGCCCCCAGTGCGGCAAGGCCTTCTTGTTCGCCGCCTACCTGCGCAAGCACCAGCGCACCCACCGGGACTCCTACCCCTCGCCACAGACCGAGCCCCAGGGCCTCGCCTCCCCCACTGCAGATGCCCAAACCCTGCCACTCACCGTCCCCCTGACCTTCCAGACCCTTTCCACCACCACAACCGTGTTCATCGATAAGACTGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169528 lncRNA upstream 1340 12784088 ~ 12786060 (+) True G135038
TU169522 lncRNA upstream 63206 12702323 ~ 12724194 (+) True AMCG00012191
TU169523 lncRNA upstream 66236 12719862 ~ 12721164 (+) True G135033
TU169508 lncRNA upstream 71285 12653295 ~ 12716115 (+) False G135026
TU169515 lncRNA upstream 87524 12636699 ~ 12699876 (+) True G135027
TU169539 lncRNA downstream 48232 12836252 ~ 12840315 (+) True G135045
TU169548 lncRNA downstream 85198 12873218 ~ 12895581 (+) True G135051
TU169550 lncRNA downstream 101750 12889770 ~ 12901593 (+) True G135053
TU169552 lncRNA downstream 109010 12897030 ~ 12897756 (+) True G135055
TU169568 lncRNA downstream 171728 12959748 ~ 13247725 (+) False G135067
AMCG00012194 mRNA upstream 23724 12762624 ~ 12763676 (+) True AMCG00012194
AMCG00012193 mRNA upstream 28654 12758021 ~ 12758746 (+) True AMCG00012193
AMCG00012191 mRNA upstream 65776 12714996 ~ 12721624 (+) False AMCG00012191
AMCG00012192 mRNA upstream 133084 12651153 ~ 12654316 (+) True AMCG00012192
AMCG00012198 mRNA upstream 164319 12621011 ~ 12623081 (+) True AMCG00012198
AMCG00012200 mRNA downstream 2507 12790527 ~ 12799451 (+) True AMCG00012200
AMCG00012206 mRNA downstream 245088 13033108 ~ 13065375 (+) True AMCG00012206
AMCG00012207 mRNA downstream 281184 13069204 ~ 13074014 (+) True AMCG00012207
AMCG00012209 mRNA downstream 292169 13080189 ~ 13080518 (+) True AMCG00012209
AMCG00012210 mRNA downstream 331993 13120013 ~ 13122006 (+) True AMCG00012210
TU169530 other upstream 1340 12785208 ~ 12786060 (+) False G135038
TU169527 other upstream 10243 12770783 ~ 12777157 (+) True G135037
TU169498 other upstream 71285 12640844 ~ 12716115 (+) False G135026
TU169493 other upstream 71285 12650639 ~ 12716115 (+) False G135026
TU169494 other upstream 71285 12708890 ~ 12716115 (+) False G135026
TU169576 other downstream 180357 12968377 ~ 12974053 (+) True G135070
TU169632 other downstream 481176 13269196 ~ 13276971 (+) True AMCG00012217
TU169557 other downstream 634415 13422435 ~ 13425359 (+) True G135058
TU169846 other downstream 683081 13471101 ~ 13508799 (+) False AMCG00012228
TU169847 other downstream 683081 13471101 ~ 13508799 (+) False AMCG00012228

Expression Profile