RNA id: AMCG00012201


Basic Information

Item Value
RNA id AMCG00012201
length 4920
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00012201
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12806962 ~ 12825753 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTCACTCACTCCAGCTGAACAAGGAGCGCTTTGTCGGTGGCGCGACACTGGACCACCGAGCAGCCGACTCCGCACCAGGGCTCCGGCAGCTTCGCAGCGCAGACATGGGCTTTAAGACGatgctgtgtgtgctgtgcacAGCCATGGCCGCCGCCGGGGCCGAGCTGCAGAGAAGCCCAAATGAATCCCACATGATTCTGACCAGTATTCGCAACATCCTGGATGTATGCAAACATGAGACACCATACAATTTTGGGACTCTAGAAGGCCTGAAGATGGAGGACCCCAGTCCCAACATGTGGAAAGTGGTTGCCCTGGTCAGCTTCTCTCTCATTGCTGTCTTGGCCGTGTTGATGATCGGTGTTTTGGTACATCACTGCAAGTCTGAGAAGAACAAGCCTTTACGAGAGCCCATCGAAGAGACGGCAGGACCACTCTATGCAGCGGTATAAACATCAGAATAAAACCTGACATACTTGAGATAAGGGATGAAACTGCAGGACAGTAGAAAGAGAGCAAACTGGTCTTCATGATTAGTTCGGGACAATTTCGGACCATTTCTAAGATCTGACCAGTTGTGTTTCTGAGATGGCCTTCCAAGCCATTGGATCTGCTGCAGCCTCAGGCCTGGGATACTTCTACTttagtgatttgttttatttgtttctcatgCCCAGTTTAGgcaagaaaagaaacactgtCTGCCTCTTTTCGTCATCGCAAACCATTTTTCTCCCAACTGTAAAAGGCAAAGGCCTTTGGGCTTCCCTTGAGAAACTCTGTGTTgggagaaaaatgtttttttttcataatcttttcttattttattttttttatatacgaGAGGGTTTAAGCCCTGAACGTATTgcattcagatattcagatgaagcactatttttaaatggagaaCGGCAGACATCTGAACAATGGgccatttttgtttccttgtttttgtttctaatttatttatttatttttacctagAGCTAAGCTTACTCaatttggtttagtttttgtttgtatagttGTTTTGGCCACTGTACAGAACACACAACCTGCCTTCATTAATTTGACccaatacatttaattggattttaataTTACGGATTTTATCCAATGTGGGGGTCGGGGGAGAgcatatatttcatattttgttagtTTCCATTGTGTTTCATGATTTCTGCCgggtttcatttcaaaatatttccaaGGTTCCTTAGCTTTCCCCTTCCCTCCATTTTGCGCCTCCAAGAGTCATTCTCTTCCctctccattttttttaatgctgtagGACAGTCATTCCTGAGAGtctgttgtatttatgtatttatttattgaacagAAGAATAAGTCACCAACCTCCTTTTGTGACTCTTCCCTTCCTTTTGCGCCTCCATTTTTAGCCACTGCTCCATTATTTCGTATGGAAGCTCTGAGAAGGGTTTGGCCACTTTTTGTCACTCTTTACCAAAAATCTGCTGGGCCCAGAGTTGACTACAGTTGCTGGTGCAAAATTAAACTACTAAAAGGATGGTCTTTAGTAAAACAGTCATCATGACGGGAAAGAAAATACACTAAAGCAATggtgaagaaataaaaacccAGTGTAGAAATCCAAGAATATTTAACAGAATATAGggaaaacaagcaagcaaaatGGCTGACAAAAAAGTGAATGGTTAGTTTGGAGCAAATGTACATCCTCAGTTACAGTAACTTTTCATGTCTTCAATTGATATTTTGAGGCAGAAAGCATTCAAATCACAGTTGCACAAAACAAGAATGACTGCTTTGAAAGTCCTACTTTTTAAATCCATCAACATCCATAAATAAGACTATTTAACATGCATTAAACATGCTCCTGGGGGGGAAAAAGATATTAACCCACATCTGCAGCGTTTCCTCCAAGTTCCAAGACATTATAGTGATTAATCATGCATATGAAGTGGTTACGCTTAATTGCCTCCCTTTGCCCCACACAGACAATCATTAGCACAAGCTGCTGTTTGGTCAGCGTTGGAGAAAGTGGAGCAGTTTCGTACCCCTATGACAGAGGTCCCGTGAGACTTCATGCTTCCACTTCCTTCAGTTACTTTTATGTCACGAAACTCGCCGTGTTTCGGAGCGAGAAAGGGGCTGTTATCAAAACAAAGCACTTGGAGCTTTTGCTGAATCGGAGAAACTCAATCTCACTCTTAATGAACATGGAAgggaaaactatatatatatatatgtaataactttaaatacataaatcacatCCTTACAGGAGCTCTTCAGAGGAGAGAGACCTACACCGCATCTGTTTTTGCAGCTTGTGGAAATGGGAAGCTGGTTAATTGTTAATTGCCTTAAGGACCTAGTCTTTAAATGATTTCCCTGCCCACACAGTGCGAGACAGTAAAAGCTTTCAAAGGGGCTTCAAAGGGGCTCTACAGCTGGGTACAATTTGACATTAATTGTGGGACAACTGTACTGCCAGCTATATATGTCTCTCAGGCGTTCTCTGGTTTGATTGAACTTTCCTTTGGTTTTGGGTTTGGTTGCAATGTGCGCCAAACTTTAATCTAGGACGGGTTGTGTTTCCTTAGCAGTAACCGGTAGTGGATAAgtcagaggtgtgtgtgtgtgtgtatatatatatatataaataaaatagcattttaatttcttcctcTTTGCAAAATCATTAGGAGCCAACTTATGCTTAGGCTGGCTTTGTTGTACAATATTCCCTTaggtgtgtacatgtgtgtgtgtgttttttacataCTGGCACTATTAGCCTCCTGGTGAGGTCTGTGCAGATGCAATGTAAATTGATTCTGGCTGTTAGTTTCGTATTTGCTGCTAAAGATTGGATAGGTTGATTATAAGCATTGTTCCCATGAATCTCGTAGCGTGGGAGACTGACAACCAGCAACAGAGGGAGGAGCTCATGTAGCTTTTTCACGTGTTTTTCCTTTCTGCGCTTCCTGTCACCCTTTTCATCTCCTTTTTGGGATCCTCAAAAACCCATCAGCCTTTTTTCTCCCCTTACTAGGCTTTGAGCTGCCACTGGTGGCAAGTTGCAATGGGGAAGCATCCCTGGCTGTGCTTTTTTAACCTGTCAGTCTCTCCTGTTTGAATGCTTCTAGAACAGTTTCTGGGCTGTAGAATAGATATCCTTTGTGAGATTCCAGTGCCTCTCTGCCACCTAGCCCCAGTCTGCATGAACAAATCACAGCCCCTACCCTTCTGCAAGTTAACCATGGTAAATTTACCATAGGAGTCCCATTTCACATGGTTTCACTGTGCTTGTGGCCTAGTGTTCCAGTGGTCTCCTATGGCTTCCACCTGCCTTCACTGGGCTTCACTAACACTGGACCATGGGGATAGCAATGATACACCATCAAGGCATTTTTATAGGCTTTTGTATTACCCCATGATCCAGTGTGGTAAAGTTTCCCTAGGAAAGCACTGTAAAACTACTGTACAACcgaagtaaaataaaaagtaagttAAAAAGCTGTCTGGGAGAAACGGTTATGGGCGTGAGTGCAGGCAAACGGGTTTAGGCTTAAGAGAATATTTAGGCTTGGAACTCCATACTGGGACCACAATGAGGGTGTGGCTTGGTTTGGGTTTTGGACCCTTGGCAGGACCACACTGGTGACTTTCCCTGTGGCTCAACATGTGAAACCAGAGCACAGAGGAagactactgtactgtacttgcTCAATCAAGtagcagatttattttgtttatttcctatttttatttttatttttctgtagcaTGATCACACAGTAGCAAGGGCAACCAGCATGTCCATCACCTTTTCTGTACATCTGCTGTGAAGCAGTGTCGAGGGCAAGGTGCTCGATGTTCTCTGCTTGATCCCTCCTTGTATGACTGCCATGTATTCCTCTGGATGGAGGGTCTTGAGTCCTGCTCCTGTACAATAGCTACATCCCGGTGTCCTCTGGTTCTCATGGCAGTCGAGCTCTGAACAAAGTCAAAGGTGAAGGTGATATTCAAGCCGGAAGCTGATTATTATAGGCTACAGGAGacaagtgcattgtgggaaaatTGGATAATGccagtatatatattaattctcTCAGTGAGgtagttaattattttaacaatgcagGATGCTGTAGATCTCTGCAACCAGGGCTACTGTCTGCCTCTTGTGGTCAGTGTCTGAATGTTCCCAGCAGACACACATGTTCAACAGCTGGGTGACTGATCTCTGTAAGAAAGTCATTTAGCTGCCTTTTAACACTCATGGTGGGTGGTAGGGGAGTGGTCTCTGCTTCTCAGGCAAGAGTTCAATCAAGTGTAAAACCAGATGACACCGATTTACTCCTTCTGACTCCCTTGCAGGCTTCAAAGGTGCTGCTGAATTTGCAAAATGTGCAGAAACagttacaatttaaaacaattgttgcccccttttttcttcttctttgcaaGTCTGACCATTACAATTCCGGACATATTAAATTATGTTGCTGCTGTGGGATTAGAAAGACAAGGAAAGGTAACGGACAAAGCAATGGATCCCAATGGATAGCTTGTGTCCAGTGCATAGGAATTGAAACTGCATACAGCCCATACAGAATCAAGTGTACATTGAATTTTGGCATCTCCAGCGTGATCATGTAACGAATTGGGACAGAAACTGAATGGCAATCGCTCAATTATATCAATTCCAAATAAACCCCAGGCCCACGGACTGTTTTTTCCCATCTCAGCAGTGtgccttttgtgttttgttttgtttttccttttgaacCCATTTATAAAAACTTATTACAAATCTTCCAGCAAGACGAATATAttgaatgaatgtgttttgGCTTCCTCTGTATcgattgttctaaatgaatctgaataaactgagcacttttttgggggggttattTGAA

Function

GO:

id name namespace
GO:0004953 icosanoid receptor activity molecular_function
GO:0004954 prostanoid receptor activity molecular_function
GO:0004955 prostaglandin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169738 lncRNA downstream 4894 12764572 ~ 12802068 (-) True AMCG00012197
TU169707 lncRNA downstream 90852 12568251 ~ 12716110 (-) False G135146
TU169709 lncRNA downstream 105847 12687026 ~ 12701115 (-) False G135146
TU169719 lncRNA downstream 106406 12637093 ~ 12700556 (-) False AMCG00012196
TU169728 lncRNA downstream 174903 12578865 ~ 12632059 (-) False G135151
TU169746 lncRNA upstream 38107 12863860 ~ 12952125 (-) True G135161
TU169763 lncRNA upstream 262092 13087845 ~ 13101480 (-) True G135172
TU169778 lncRNA upstream 324762 13150515 ~ 13214542 (-) True G135184
TU169792 lncRNA upstream 445059 13270812 ~ 13279294 (-) True G135193
TU169812 lncRNA upstream 495978 13321731 ~ 13329044 (-) True G135202
AMCG00012197 mRNA downstream 30040 12767850 ~ 12776922 (-) False AMCG00012197
AMCG00012195 mRNA downstream 50615 12721237 ~ 12756347 (-) True AMCG00012195
AMCG00012196 mRNA downstream 106232 12699610 ~ 12700730 (-) True AMCG00012196
AMCG00012188 mRNA downstream 165350 12633737 ~ 12641612 (-) True AMCG00012188
AMCG00012185 mRNA downstream 302457 12483528 ~ 12504505 (-) True AMCG00012185
AMCG00012202 mRNA upstream 34008 12859761 ~ 12886799 (-) True AMCG00012202
AMCG00012205 mRNA upstream 77504 12903257 ~ 12923677 (-) True AMCG00012205
AMCG00012204 mRNA upstream 104034 12929787 ~ 12938820 (-) True AMCG00012204
AMCG00012203 mRNA upstream 129252 12955005 ~ 12960892 (-) True AMCG00012203
AMCG00012208 mRNA upstream 156576 12982329 ~ 12992699 (-) True AMCG00012208
TU169730 other downstream 103477 12702450 ~ 12703485 (-) True G135152
TU169444 other downstream 583777 12221205 ~ 12223185 (-) True G134981
TU169437 other downstream 593163 12191555 ~ 12213799 (-) True AMCG00012174
TU169436 other downstream 593163 12202762 ~ 12213799 (-) False AMCG00012174
TU169390 other downstream 687330 12119280 ~ 12119632 (-) False AMCG00012170
TU169700 other upstream 54540 12880293 ~ 12990631 (-) False G135146
TU169712 other upstream 54540 12880293 ~ 13426065 (-) False G135146
TU169749 other upstream 69415 12895168 ~ 12911887 (-) True G135164
TU169761 other upstream 256468 13082221 ~ 13101480 (-) False G135172
TU169764 other upstream 256468 13082221 ~ 13084161 (-) False G135172

Expression Profile