RNA id: AMCG00012207


Basic Information

Item Value
RNA id AMCG00012207
length 1993
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00012207
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13069204 ~ 13074014 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAATAAAGTTTATTCAAAAGGTGAAagttcaagaaaataaaaatggcggCGCCCGTGAGGGAGCGGGCATGGACTCTGTGTTCATCAAATGCTGCCGTTTTCAGAAGCCTTTTCAATCGCACTTTCGCCGAACTGGGTCGAAACCCATATACAGCTACACTCACCTGTCGTGCGCCATGCATCTTCCCTCATTCAGACAGAGGGCGGATACTGTGCCATTCAGCGGCGCTGACGGGACCGGCTCCCCGGCTGCAGACAGCGGCGGCTGGGCAGAGAACAGGACTCCGCACCGCCGCAGTCTCGGATGAAAATGAACCCCCGCGGCTGAAAGCCAGCGATCTGGCGGAGAAAATACGTAAAGAGAGTAAGAAGCAATCGACAGAAGCCAAAGCTGAGACTCAGACCCCCAGGCCTCCGGTGCTGCGGCGGGTGGATGAGCTGCGGCGCTTCAGCCAGCAGCTGCAGAGGGTCCATCCCAACGTGCTGGCCAAGTCCCTGCTGCAGGGCAAGCTGCTGGAAACCGCCGAGCTGGTCGCTATTAACAAGCCCTACGGAGTCCCGGTGCACGGGGGGCCGGGGGTGAAGAACAACATCGCCGAAGTGCTTCCTGTCCTGGCCAAGATGGTCGGCGGCATGAGGGCGGGCCCCCTGCACCTGTGCCACCGATTGGATAAGGAGACGACCGGGGTGATGCTTTTGGGCAAAAGCGAGGAGGCGGCCAAACGCGTTCACCAGCTCTTCAAAACCCACCAGGTGGAGAAGAAGTACTGGGTTCTGAGTATTGGGGTCCCAGTTCCTTCAGAGGGAGTGATTGACATCCCCATCATTGAGAAAGAAGTGGAAGGCCCTCAGCCACACTATAAAATGACCCTGAATCCGGTGTACAGGATCGCCGAGGGGGGTGAGAAGGTGTCCCGGGTGCGGGCCAACAGACAGGCCCACTGCGCCGTCACCCGCTACCGCGTCCTAGCCTCGTCCGGGGCCTGCAGCCTGGTAGAGCTGCAGCCCATCACAGGGGTGAAGCATCAGATTCGGGTTCACATGGCGTACGGACTGGGCTGCCAGATCCTGGGAGACCATAAATACGCCAACTGGAGCAAACTGGCACCACAGAAACTGCCGGACGGGGTCCTGAAGAAGCTGGGGCTGGAGCAGAGCAAAGTGCGGCACCTCCCCATCCATCTGCACGCGCGCCAGCTCGTCCTCCCCGGGGTCGAAGGTCACCCAGAGGTCACGGTAAACTGCCCTCTGCCCAAGTTCTTCTGCAACTCCCTGCGGAGACTTGAGATCCCGCTCCCGCAGAAATGACTCTGCAGCCCGTAAGGAAGTGCTGGCTCTCTTGGCAGCACTCCAGTACATTAACCTGGAAGAGGTCATCCATGAGGGCTGGTGTGGAGAAGCAGGCGGGACCTCCAACCTTCAGAGAAAGACAAGCTGAGTGTCCAACTTCCTTGACTCTGATTGGTTAATGCAGATGTGGTTCCTTTGTGTTATTGCTGCACCACCAACAGGTTAAAAACTGGCCTGGTTTAGCACTAAGCCAGGCATCTGGGATTGTGTCAAAAGCGCTCTGCCCTGTAATGAAAATTGAGCATCTGCTGGTCAAAGCTTGAAACCGCATCACTAGTCTATTTGAGTGAACTGTGTATTTCTCCCACTCACTGGCAATTTCAATCCACAATTTACTCAAAAAGTTAagtcattaacttttttttatttttatttcaacagttGACTTTATATACTGGTCAGGAGgaaataaatctatttaaatatctgaGTGAATGTATACATTAGTCAGCAGTAGTACTCCACTTTCTGGGAGAGGAGTCATgtgagtgtataaggctgtatattgtaaaaataaaatgtacttactGCATTGTGGTTATTAATTGTCAGATTCATTATAAATGCCTTTAACATCCTTAGTAATCCAGATTAGTTACACAATACCTTGTGTACAGCATTTGCTCTACCTTCGATTAAAAAG

Function

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
K22538 RPUSD4; mitochondrial RNA pseudouridine synthase RPUSD4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169579 lncRNA upstream 83062 12985507 ~ 12986142 (+) True G135073
TU169578 lncRNA upstream 84110 12984445 ~ 12985094 (+) True G135072
TU169550 lncRNA upstream 167611 12889770 ~ 12901593 (+) True G135053
TU169552 lncRNA upstream 171448 12897030 ~ 12897756 (+) True G135055
TU169548 lncRNA upstream 173623 12873218 ~ 12895581 (+) True G135051
TU169615 lncRNA downstream 138660 13212674 ~ 13216360 (+) False G135097
TU169614 lncRNA downstream 140318 13214332 ~ 13216360 (+) True G135097
TU169629 lncRNA downstream 187745 13261759 ~ 13262054 (+) True G135110
TU169641 lncRNA downstream 213652 13287666 ~ 13294886 (+) False G135117
TU169639 lncRNA downstream 219605 13293619 ~ 13298200 (+) True G135117
AMCG00012206 mRNA upstream 3829 13033108 ~ 13065375 (+) True AMCG00012206
AMCG00012200 mRNA upstream 269753 12790527 ~ 12799451 (+) True AMCG00012200
AMCG00012199 mRNA upstream 281184 12787400 ~ 12788020 (+) True AMCG00012199
AMCG00012194 mRNA upstream 305528 12762624 ~ 12763676 (+) True AMCG00012194
AMCG00012193 mRNA upstream 310458 12758021 ~ 12758746 (+) True AMCG00012193
AMCG00012209 mRNA downstream 6175 13080189 ~ 13080518 (+) True AMCG00012209
AMCG00012210 mRNA downstream 45999 13120013 ~ 13122006 (+) True AMCG00012210
AMCG00012211 mRNA downstream 53154 13127168 ~ 13131962 (+) True AMCG00012211
AMCG00012213 mRNA downstream 70413 13144427 ~ 13148574 (+) True AMCG00012213
AMCG00012212 mRNA downstream 92586 13166600 ~ 13182830 (+) True AMCG00012212
TU169576 other upstream 95151 12968377 ~ 12974053 (+) True G135070
TU169530 other upstream 283144 12785208 ~ 12786060 (+) False G135038
TU169527 other upstream 292047 12770783 ~ 12777157 (+) True G135037
TU169494 other upstream 353089 12708890 ~ 12716115 (+) False G135026
TU169632 other downstream 195182 13269196 ~ 13276971 (+) True AMCG00012217
TU169557 other downstream 348421 13422435 ~ 13425359 (+) True G135058
TU169846 other downstream 397087 13471101 ~ 13508799 (+) False AMCG00012228
TU169847 other downstream 397087 13471101 ~ 13508799 (+) False AMCG00012228
TU169844 other downstream 432176 13506190 ~ 13508799 (+) True AMCG00012228

Expression Profile