RNA id: AMCG00012211


Basic Information

Item Value
RNA id AMCG00012211
length 1551
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00012211
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13127168 ~ 13131962 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGTCCCACCTAGTGTCAAAACATCTTGGTGGTGAATATGGGACCAGTTAGTAGCCTTAACTTTAATGCCATATCTGGTCCTGGTCTCTGAGTCAATTCTGACTTGAGCCTCCAGGTTGTCCAGGTTTCCTGCAGTATTATTGTCTAATCTCTAGGTGAAAGATGCTCACTCTTAACACCATGGTCTTTTTTTGGTCCATTGTCACTTAAACattgtggtttcattttattgctgTGCACCAGGCCTTTCAGAGCAGTCTTGCCTACCATCAAGACATCCTCCTATGCTGCCCCTGCCCAAAATGGCAGAAGCAGGCAATCCCTTGCTGTGCTCCGAGCAGGAGCTGACCTGCTCAATCTGCCTGGACATTTTCACCGACCCCGTGTCTACGCCCTGTGGCCACAACTTCTGCCAGCTGTGCATCGGGGGCTACTGGTCGTCCAGCGAGGTCAGCACCTGTCCCTTATGCAAGCGAGTTTTCCAGGGTCGGCCAGAGCTCAGCATCAACCGTGTCTTCTCCATGATTGCCGAGAGCTACAAGGAGGCCAGTGTGGGGCCTGCCAGCAGCCTGGGGATGGGGGAGGTGGCTAAACCTGGGGAGATTGCTTGTGACGTGTGCATGGGCAGAAGGCTACGTGCTGTGCGCTCCTGCCTAACTTGCACTGCATCCTACTGCGAGACCCACCTCCAGCCCCATGCCCAGAACCCGAACTTTGCGCACCACCGGCTGCTGGATCCCCAGCAGGCCTTCAAGAGCCGAATGTGCAAGACCCACCACAAGCTCCTGGAGGTGTTCTGCCGCAACGAACAAGTCTGCGTGTGTTCCAGCTGTGCCCAGCTTGAGCACAGGAAGCACAGGACCGTTTCTGTGCAGGCTGAGCGAAACATCAAACAGAGACTGCTGGGCAAGATTGAGACTGAGATACAGAAGGGCATCCATCAGAGATCACACAAGCTGTCGGAGCTCCGAGGCACTGTGGATTCCTTCAGAAACTCCGCTCAGAGGGAGACTGCGGAAGTGGAGGATATTCTCCTAGGTGTGATCCGGTCAGCAGAGAGGATCAGGAGGGAGCTGGTCGAAGGGATCAGGCAGAAGCAGGCGGCCATGGAAGCACGGGGGGACGTCCTGATTGGCCAACTGGAGCAGGAGGTGGCAGAGCTGCAGAACCGGCACTTGTCCCTGGAGCAGCTCTCCAGCTCGGAGGACCACATCCACTTCTTGCAGagTTTCAAGTCCATAAGCTCCCCCCTTGCTACAGAAGACCTATCGGAGGTCAGTGTGGACATGCAACTGTCCCTGGAGGAGGTGAAGATGGCACTGAGAGACctgagagagaggctggacaACATCCAAATGGGCGAGGTCAGATCACCACCATCCATTCCAGTTTCTCTCCCTCGCACTGAGAGTATGATGAGCCTAAGGGGGCTGAGGAGGAGGGAGTGGTCTCTAAAAGATCTCCGGAAGCTGCGAACAGGATCCGGTGTAAAGAAGATCCGGACCTATTCAGGTGAGTCAATCTCAGACTCTAGTAATGGAAGAAGATGA

Function

GO:

id name namespace
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169579 lncRNA upstream 141026 12985507 ~ 12986142 (+) True G135073
TU169578 lncRNA upstream 142074 12984445 ~ 12985094 (+) True G135072
TU169550 lncRNA upstream 225575 12889770 ~ 12901593 (+) True G135053
TU169552 lncRNA upstream 229412 12897030 ~ 12897756 (+) True G135055
TU169548 lncRNA upstream 231587 12873218 ~ 12895581 (+) True G135051
TU169615 lncRNA downstream 80712 13212674 ~ 13216360 (+) False G135097
TU169614 lncRNA downstream 82370 13214332 ~ 13216360 (+) True G135097
TU169629 lncRNA downstream 129797 13261759 ~ 13262054 (+) True G135110
TU169641 lncRNA downstream 155704 13287666 ~ 13294886 (+) False G135117
TU169639 lncRNA downstream 161657 13293619 ~ 13298200 (+) True G135117
AMCG00012210 mRNA upstream 5162 13120013 ~ 13122006 (+) True AMCG00012210
AMCG00012209 mRNA upstream 46650 13080189 ~ 13080518 (+) True AMCG00012209
AMCG00012207 mRNA upstream 53154 13069204 ~ 13074014 (+) True AMCG00012207
AMCG00012206 mRNA upstream 61793 13033108 ~ 13065375 (+) True AMCG00012206
AMCG00012200 mRNA upstream 327717 12790527 ~ 12799451 (+) True AMCG00012200
AMCG00012213 mRNA downstream 12465 13144427 ~ 13148574 (+) True AMCG00012213
AMCG00012212 mRNA downstream 34638 13166600 ~ 13182830 (+) True AMCG00012212
AMCG00012218 mRNA downstream 55420 13187382 ~ 13202392 (+) True AMCG00012218
AMCG00012217 mRNA downstream 137405 13269367 ~ 13276967 (+) False AMCG00012217
AMCG00012223 mRNA downstream 171094 13303056 ~ 13307523 (+) True AMCG00012223
TU169576 other upstream 153115 12968377 ~ 12974053 (+) True G135070
TU169530 other upstream 341108 12785208 ~ 12786060 (+) False G135038
TU169527 other upstream 350011 12770783 ~ 12777157 (+) True G135037
TU169494 other upstream 411053 12708890 ~ 12716115 (+) False G135026
TU169632 other downstream 137234 13269196 ~ 13276971 (+) True AMCG00012217
TU169557 other downstream 290473 13422435 ~ 13425359 (+) True G135058
TU169846 other downstream 339139 13471101 ~ 13508799 (+) False AMCG00012228
TU169847 other downstream 339139 13471101 ~ 13508799 (+) False AMCG00012228
TU169844 other downstream 374228 13506190 ~ 13508799 (+) True AMCG00012228

Expression Profile