RNA id: AMCG00012223


Basic Information

Item Value
RNA id AMCG00012223
length 3087
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00012223
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13303056 ~ 13307523 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCCGTGCGGGCGCCGTCAGACTGCCGCGCAGACACCGGTACAGGTACAGGTACAGctgtgtgtgtattcccCCCCCTCAGCTGTCAGCTCTCGTCATGAAGCTGCATGAGAAGATCCTGGTCCACTACTTGTCCAGCAACTCCCCAGTGGACAAAGAGGGCCACCTCTACAAGAAGggggaGCGCAACACGTCGTACCAGCGGCGGTGGTTCGTGCTGAAGGGGAACATGCTGTTCTACCTGGACCGGCGTGGGGGCGAGCCGCTGGGCGTGATCGTGCTGGAGGGCTGCTCGGTGCAGCTGTGCGAGTCCGAGGAGCAGTTTGCCTTCGCGCTGGTGTTCCCCGGGCCCGGCCTGCGCACCTACAAGCTGGCGGCCGAGGACCAGGCCAATCAGGAGAGCTGGATCAAGGCCCTGCTGGCAGCCAGCCACAGCTTCCTCAGCGTGCTGGTGAATGACCTGGAGAAGCAGTACGAGGATGCCAAGAGAGCAGCTTACTCTGAAGGCAAGTACAAGCGctccactgtgattggctcagaCGCAGAGATGCTCACCGAATCGCTCGTGGATCTGGACATCGTCCCCTTCTCCGCTCCGGCAGTCAGGGAGGGGAGGAGCTACAGCACTAATCACCTACATGCATTGCCCCCTTCCACCAAGCCAGCAAAGAAGTCTCCCAAGTTGTGGCCCAAGAGAAACGCCCATGTCACGCCCCTCAACGAGCCGCTCCCACCCTCAGGAGGCGGGGCCCGGGCTTCACAGGACTGGTTTGCGGTGGGGGCGGAGACGCTGGCAGACTTCAGTGAATTGCACGAACTGTATGGGCGGGAGGTGCGGGAGCTCCAAGCCAATTGGCAACGGAAATGGGCAGGGCAGGGTGGCGATAGGGAGGGGGAGAAACAGGAAGTGGTGTCAGACTTGATTGACTTGGGGTGAAGAAATCGGTGCGGTTCCTTCCTGTCCCATCCTTTtccttgtctctgtctctttctgcaGTGCTAATGTCCTGCAGTGTCCTGTCAGTCAGTCCGTATGTGTCAGTAGTCTATGTAGGACTCCCCTCTTTTCGATCAATCTCTCTCAAGTTCAGCACaaccccacccctctctctgtatCCCTGTACATGTCTGTCgctgtgttttttaataagCTTGCCTGACAGTCACCTCTTTCCTTGATTAACTCAATCCGATTTAAAgccaggggtgtcagactccagtcctggatGGCTGGGGTATCCCCTGGTTTTTGGTCCAGCCCAGCCAtcagctccttaattggtctaattaaattatgaacTGGATGAATTGAACACTCTCCTGAATCTGAAATGCTTGGTGGGGGACAGCATCTGGAGTAATTGACATCGGGTTATCAGCTGTTAAATTGAAATGTGAGTGTTGAGTTCTAcctgagtggggggggggaagccgGACTGTACAAGGGCGGCTGTTTAGAATCTCGGTACACCGATTGCCCCAGTGTGTCCAGACGTGCCCCCAGTACTGATTAATACAGCACCTGCATCAGGAAAGAGCACATATGTGTGACACGTGTGTTACTCTGTGAGTGCCACAGCACCACACATTGACGTGTAACCTGCTGCGTGTACGAGCCTCCTGTCCACGTGACTTCTGTTAATGACACTGGATCAGTCTGTGTGCTGGGTCTCTGGGTTATATACAATATAGCAACACCTGAGAGAGTGGACctgtcttttttaaaatattaatatttttattagtattatgacCCATGTTTAAGGATctgctgaatgttttttttatatgtatttattttgcacgtTTACCTATGTATTATAGACATTTGGCCTTTTAACTTGCTGTGGGTGGTTGTACCCTAGTGTTACTGTGGTTCCCTATGGGGTTCAGCctgccttcactgtgctttaccaGTAATATACCATGGGAAATATTAATATGGCTTGTTTACTGTGGTACACTTTGATTCACTCGTTGTCCAGTGTAGTAAGACAGGCATGTTGAACCCCATAGGGTACGATCATGGTAAAACGAAATGCAGTCCCATGATAAATTTATCAAGGGAGACTTTCCTAAGAGGTGCCAGGCCACCCACTTCTGCACAGCATGGTGagttttgtattataaaaatactttacaacACTTGTAACTGGGATGGCACGGCAGTAACCTATTCTTCAGGGTCTAGTGCTGGTCTAGAGCTAGAACCCTGATCCGGGAAGGTTAATAACtaccccacccacacacacacacacaaacacttcctcagttaaataataatttttccaAAGAAAAGGGAAGATTTAATACTGATTGGTTGAGCAATATGGTGGTTTAGTGGCGGAGTTGATCGCTGGGAGATCACTGGGCATAACCCGGCATTGTTTACAGCTCACCTCATTTAATCCCCAGTGTCTAAAGATTGTTGCTCCATATCCCTGTGcacagccagtcagtcagttagttagttagttagtgtatcagtcagtcaggctgTCAGTATATCAATTGATGTATTGgtgtttcagtcagtcagtccatATATCAGTGTATCAGTAAGCCAGTTAGGCAGGCTACCTGGGAGATTCGTGGGAATCCTCTTCAGCCCCTCCAGGCACTGACCTGGACGGGCTGCACTGACCCATCACTGACATATGTGCCCCAAAACTAAGTGGAATTGTATATTTTGGGGGAAGGGGGACAGTGCAGGAAGAGGACTGCAGATCCCCCTTCCActaggtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtctacactACTGCCCAGCAATGAACATTGCTTATGGCAACTGTCTGTGTatgcacaatgtttttattctgtatagcaaatgcatgtattttacagTGAAGGAGAAAAATCGACCATGTCTGTACACTAGCCTGTGTCTTGCGGTCTTCACACTGTAGAACACTGGCGGAGAGGACAGGGGAGAGCCAGCCATTTGTATAGGCTGAGCCATACACATCTGTACAGGgagttttaatatacatatatggggggtgttgttaaaaaaaaaaggaatttaagcatttcaaaataaaacacttcttCAAACAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169639 lncRNA upstream 4856 13293619 ~ 13298200 (+) True G135117
TU169641 lncRNA upstream 8170 13287666 ~ 13294886 (+) False G135117
TU169629 lncRNA upstream 41002 13261759 ~ 13262054 (+) True G135110
TU169615 lncRNA upstream 86696 13212674 ~ 13216360 (+) False G135097
TU169614 lncRNA upstream 86696 13214332 ~ 13216360 (+) True G135097
TU169667 lncRNA downstream 65080 13372603 ~ 13397636 (+) True G135131
TU169673 lncRNA downstream 109882 13417405 ~ 13421051 (+) True G135137
TU169675 lncRNA downstream 119828 13427351 ~ 13427999 (+) True G135138
TU169849 lncRNA downstream 170039 13477562 ~ 13484478 (+) True G135226
TU169884 lncRNA downstream 223249 13530772 ~ 13531293 (+) False G135250
AMCG00012217 mRNA upstream 26089 13269367 ~ 13276967 (+) False AMCG00012217
AMCG00012218 mRNA upstream 100664 13187382 ~ 13202392 (+) True AMCG00012218
AMCG00012212 mRNA upstream 120226 13166600 ~ 13182830 (+) True AMCG00012212
AMCG00012213 mRNA upstream 154482 13144427 ~ 13148574 (+) True AMCG00012213
AMCG00012211 mRNA upstream 171094 13127168 ~ 13131962 (+) True AMCG00012211
AMCG00012224 mRNA downstream 10392 13317915 ~ 13323389 (+) True AMCG00012224
AMCG00012228 mRNA downstream 199491 13507014 ~ 13508799 (+) False AMCG00012228
AMCG00012227 mRNA downstream 218161 13525684 ~ 13527970 (+) True AMCG00012227
AMCG00012236 mRNA downstream 233630 13541153 ~ 13543947 (+) True AMCG00012236
AMCG00012229 mRNA downstream 242531 13550054 ~ 13556902 (+) True AMCG00012229
TU169632 other upstream 26085 13269196 ~ 13276971 (+) True AMCG00012217
TU169576 other upstream 329003 12968377 ~ 12974053 (+) True G135070
TU169530 other upstream 516996 12785208 ~ 12786060 (+) False G135038
TU169527 other upstream 525899 12770783 ~ 12777157 (+) True G135037
TU169494 other upstream 586941 12708890 ~ 12716115 (+) False G135026
TU169557 other downstream 114912 13422435 ~ 13425359 (+) True G135058
TU169846 other downstream 163578 13471101 ~ 13508799 (+) False AMCG00012228
TU169847 other downstream 163578 13471101 ~ 13508799 (+) False AMCG00012228
TU169844 other downstream 198667 13506190 ~ 13508799 (+) True AMCG00012228
TU169873 other downstream 211898 13519421 ~ 13520494 (+) True G135240

Expression Profile