RNA id: AMCG00012226


Basic Information

Item Value
RNA id AMCG00012226
length 1335
RNA type mRNA
GC content 0.58
exon number 6
gene id AMCG00012226
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13296419 ~ 13300421 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCCCAGCTCCGGCTCTCTTTCTTTACGTCACTTCCTCAACTTGGCTTGTGTGTATATGGCGCCAGAGTAGAGCACGTCGCAAACTCTACCAAAGATGTCAAAGAGGAAGGTGACATttgaggagggggtgggggagtatGATCTGGCTGATCTGGAGGAGGAGATCCCCAAGAAAAAGCTGTGTGAGAGTGCGGGGGTCAGTGGTCCGGGCTCCAGGTTCAAAGGGAAGCACTCTCTGGACAGCGACGAAGAGGATGAGGGGGACGAGGGAGACGCACAGAAGTACGACATGCTGGCCAGCGACGACGTGGAAGGTCAGGAGTCTGCCACGATTGACTTTGACGAGGGGGTGCGCATCACGCCCTTCAACCTGGATGAGGAAATGCAGGAAGGCCACTTTGACTCTGAGGGCAACTACTTCTTGAAAAAAGAGGAACAGATCAGAGACAACTGGCTTGACAACATTGACTGGgtgaAGATCAGAGAGCGCCCcgtgaaaaaaaagaaaggactGTCGGCCAAGCGCACAAGGAGAGCAGGGGATGAGGACGAGgcggaggaggagaagaagagagaggagagagacgggcagcagcaggaggaggagatggaggagggagggagcgacGGAGAGGATGAAGGGGGTGGAGGGGCCGGGACAGACCCCCTGGCTTCCATGGATCGCAAACAGCTGACGGAGGCCGTGATCGAGATGCTTTTGCCAGGGGAGACGGTCGCCAAGGCCCTGCGGAGGCTGGGGGGGCTGGGCAAGGGCAGGGGGCAAGGGCGAGGCagagggagggggcaggagGCGGGTGGGGGGGATGCAGTGGGGCAGACGGACAGGGACACGGAGAAACTGGACAGACTGACCGCCCTGGCTGACCGACTGGTGGCGTCTGGGGAGTTTGAGATCTACCAGAAGACCTATGAAACCCTGGCCTACAGGTTAAAGGCCAAAGCCTCCAAGGTCCCCAAGAAAAAGAAGatgggaggagagggggaggaagaggaggaggaggatgaactGGATATGTTCGCTGAGGAGATCGACGGGAAGGAGCTTGCGAGGAAAAGACAggaggagagtgagggagaggacGAGGAGGCAGAAGACAGTGGCATAGCGAGTGAGGAGGTCATGTGGGAGTATAAGTGGGAGAGTGGAGAGCAGTCAGAGCTGTATGGGCCCTTCACCAGTCAACAGATGCAGGTGGGCCCCTCACCACAGAGTCTCAGTGCTCAAGGACGACAAGGGCCGGGGAGCCAGCCGAGCATTGCTAAAGTCACTGCAGTCGGCACATCAGTTAGAGTCCGAGCCAGGGCCAGTTAA

Function

GO: NA

KEGG:

id description
K13099 CD2BP2, PPP1R59; CD2 antigen cytoplasmic tail-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169792 lncRNA downstream 17125 13270812 ~ 13279294 (-) True G135193
TU169778 lncRNA downstream 81877 13150515 ~ 13214542 (-) True G135184
TU169763 lncRNA downstream 194939 13087845 ~ 13101480 (-) True G135172
TU169746 lncRNA downstream 344294 12863860 ~ 12952125 (-) True G135161
TU169743 lncRNA downstream 456106 12792948 ~ 12840313 (-) True G135160
TU169812 lncRNA upstream 21310 13321731 ~ 13329044 (-) True G135202
TU169837 lncRNA upstream 116984 13417405 ~ 13418804 (-) True G135217
TU169686 lncRNA upstream 122014 13422435 ~ 13425998 (-) True G135146
TU169687 lncRNA upstream 122014 13422435 ~ 13425998 (-) False G135146
TU169703 lncRNA upstream 122014 13422435 ~ 13425998 (-) False G135146
AMCG00012225 mRNA downstream 4550 13281096 ~ 13291869 (-) True AMCG00012225
AMCG00012220 mRNA downstream 29572 13259410 ~ 13266847 (-) True AMCG00012220
AMCG00012222 mRNA downstream 64030 13231622 ~ 13232389 (-) True AMCG00012222
AMCG00012219 mRNA downstream 73863 13208091 ~ 13222556 (-) True AMCG00012219
AMCG00012221 mRNA downstream 134156 13155697 ~ 13162263 (-) True AMCG00012221
AMCG00012232 mRNA upstream 165051 13465472 ~ 13486579 (-) True AMCG00012232
AMCG00012230 mRNA upstream 196066 13496487 ~ 13506591 (-) True AMCG00012230
AMCG00012234 mRNA upstream 209794 13510215 ~ 13518859 (-) True AMCG00012234
AMCG00012233 mRNA upstream 219245 13519666 ~ 13524815 (-) True AMCG00012233
AMCG00012235 mRNA upstream 235774 13536195 ~ 13539367 (-) True AMCG00012235
TU169786 other downstream 64075 13231672 ~ 13232344 (-) False AMCG00012222
TU169761 other downstream 194939 13082221 ~ 13101480 (-) False G135172
TU169764 other downstream 212258 13082221 ~ 13084161 (-) False G135172
TU169765 other downstream 212258 13082221 ~ 13084161 (-) False G135172
TU169700 other downstream 305788 12880293 ~ 12990631 (-) False G135146
TU169875 other upstream 220435 13520856 ~ 13521928 (-) False AMCG00012233
TU169886 other upstream 221957 13522378 ~ 13524681 (-) False AMCG00012233
TU169974 other upstream 404425 13704846 ~ 13705612 (-) True G135318
TU170164 other upstream 792821 14093242 ~ 14094688 (-) True AMCG00012261
TU170639 other upstream 1219409 14519830 ~ 14523063 (-) True G135814

Expression Profile