RNA id: AMCG00012227


Basic Information

Item Value
RNA id AMCG00012227
length 1348
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00012227
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13525684 ~ 13527970 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgttgggggtgtttttctcttctccccCCGGATATCCTGTTGATGTTGTTATATTCAGCGCTGGCGCAGTCCATCGGTGGCCGTTCGGTCTCAACGACACAGTTGCTAAAATCCACGGGAATCGCTCGGCGCCGAAGGGGAGTGTTAACGGGGACGGCCGGGCGATGGAGGCGGGGAGCAGCGGGGAGACACCGGCGAAGCAGGAGGCGGAGAGGACGACGGTAGAGGACGTCAGGGTGGACTCCAAGAAGTCCAAAGGCGaTTTCCTCTGGACGTCCGAGGCTACCTGGACACTGGTGCGGGTCCGGCTGGCGCTGGACAGCTCGTTCCGGCAGCCCGTGTGCAGGAAGGCGCGGCTGTGGGAGCGGGTGGCCGAGGCGGTGCGGGCGGGGGGGCACCGCGAGGTCAAGGGCCACGAGTGCGACTGCAAGTGGCGCAACCTGCTGGCCACCTACCGCAAGAACCGGGAGAGAGCGCGGCGTCTGGGCGGCCAGGCCGTGCACTGGGAGTTCTTCACCGCCATGGACGCTGTGCTGGGCAGAGGGGGCGACGATGGGGGTGCGGGAGAGGGGGCcaccgccgccgccgccaccCACCCCAGCCCTGGAAGCCCCAAGAAGAAATCCCCTCACTCAGCCACTGCCACGGCCCCTGCGGTCGCCACCGCTGCCGCCCGCCCCCAGCCCGGCTCGTCCCCAGGGCCGAGGGTGGGCGTTGCCGCCAGTGAGGTGGGCCCCCAAGGGACAAAGGTCAAGAGGAGGAGCCCACCCTGCTCCTCCTCCCCGTCCCCCTCCCCAGACGGGCTGCAGCTATACCTGGAGCTGCAGGAGAGGCGGCTGGCGCAGTGGGAGGAGCAGCGGGACCTGGAGGAGAGGAAGATCCAAGCCATCAACAACCTGGCCCAGGCCATCGCCAGCCTCGCCCAGAAGGACTGACTTGACCAGCTGATTGGCTGGAGGATTCTTTTTTAGGTTAAAACAGGCAAGGCTGTTTTACGGGAGTGCCACGCCCACCATGGATGCCACTTCCTCTTCTTGTTGGATGGTGTGGGCATGCTGGATAGCGTAGTACAATCACAGCTCCTGTCGGTCAGGGAAGCAGGATAGACGGCACAGTGATGCACGGatagtacagcacagacagagTACAGGACAATCCAGGCGGTACAGACAGCAGCCACTCACGGacaacagacgcacacagacaggaGACACAGAGTACAggacaatacagtacagcacagacaggCACGTGGTGTGCTGACCCCTATTTCAGAATGAATAACTGTTCCCTGcctttgttacattttttttttattaacataaaattaaaaaccaaaaagcCAAA

Function

GO: NA

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169849 lncRNA upstream 41206 13477562 ~ 13484478 (+) True G135226
TU169675 lncRNA upstream 97685 13427351 ~ 13427999 (+) True G135138
TU169673 lncRNA upstream 104633 13417405 ~ 13421051 (+) True G135137
TU169667 lncRNA upstream 128048 13372603 ~ 13397636 (+) True G135131
TU169639 lncRNA upstream 227484 13293619 ~ 13298200 (+) True G135117
TU169884 lncRNA downstream 2802 13530772 ~ 13531293 (+) False G135250
TU169885 lncRNA downstream 2802 13530772 ~ 13531293 (+) True G135250
TU169892 lncRNA downstream 4728 13532698 ~ 13587530 (+) True G135255
TU169893 lncRNA downstream 4728 13532698 ~ 13625360 (+) False G135255
TU169896 lncRNA downstream 9276 13537246 ~ 13541117 (+) True G135257
AMCG00012228 mRNA upstream 16885 13507014 ~ 13508799 (+) False AMCG00012228
AMCG00012224 mRNA upstream 202295 13317915 ~ 13323389 (+) True AMCG00012224
AMCG00012223 mRNA upstream 218161 13303056 ~ 13307523 (+) True AMCG00012223
AMCG00012217 mRNA upstream 248717 13269367 ~ 13276967 (+) False AMCG00012217
AMCG00012218 mRNA upstream 323292 13187382 ~ 13202392 (+) True AMCG00012218
AMCG00012236 mRNA downstream 13183 13541153 ~ 13543947 (+) True AMCG00012236
AMCG00012229 mRNA downstream 22084 13550054 ~ 13556902 (+) True AMCG00012229
AMCG00012242 mRNA downstream 168120 13696090 ~ 13700551 (+) True AMCG00012242
AMCG00012241 mRNA downstream 213269 13741239 ~ 13743991 (+) True AMCG00012241
AMCG00012243 mRNA downstream 259410 13787380 ~ 13788233 (+) True AMCG00012243
TU169873 other upstream 5190 13519421 ~ 13520494 (+) True G135240
TU169846 other upstream 16885 13471101 ~ 13508799 (+) False AMCG00012228
TU169847 other upstream 16885 13471101 ~ 13508799 (+) False AMCG00012228
TU169844 other upstream 16885 13506190 ~ 13508799 (+) True AMCG00012228
TU169557 other upstream 100325 13422435 ~ 13425359 (+) True G135058
TU169904 other downstream 56300 13584270 ~ 13585916 (+) True G135264
TU169982 other downstream 279243 13807213 ~ 13813756 (+) False AMCG00012245
TU170021 other downstream 322408 13850378 ~ 13854919 (+) True AMCG00012247
TU170041 other downstream 534267 14062237 ~ 14095797 (+) True AMCG00012253
TU170232 other downstream 718793 14246763 ~ 14295415 (+) True AMCG00012268

Expression Profile