RNA id: TU169846



Basic Information


Item Value
RNA id TU169846
length 569
RNA type TUCP
GC content 0.60
exon number 5
gene id AMCG00012228
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13471101 ~ 13508799 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gtgagagagagagagagagagagagagagagggagaaactctgacagacagacagacagacgctcAGAGAGGCGCAGAAAGGTCGCTTTCGTCCTTGTTGCAGAGCGATGGCTCTTGTTTCCACAGCGACGCTGGCTCGCAGGGCCCTGGCCACGGCTGCTGGGGGTCATGGAGCTCACGATGGAGGAGcccGGACCTGGCGCACGCTGTCCTTTGTGGTGGCGCTGCCAGGGGTGGCGGTGTGCATGGTGAACGCCTGGTTGAAGATGCAGAAGCACCACCACACCCCCGAGTTCGTACCCTACCCACACCTGCGCATCCGTAGCAAGcccttCCCATGGGGTGACGGCAACCATACCCTGTTCCACAACCCTCACACCAACGCCCTGCCTACGGGCTATGAGAGCTCTCACCACTGAGGCCGCCCCGCAGCCAGTGCCCCCGTCTGGCCGGAGGACTGCACTGCGCCCTCCCACCCTTCCTGTCTGCTTGACGGACAGACAAACAGGCAGCCTGGCATCACTCACACTGTAACCAAATTCTACCTGAATAAACAGTATctctgtaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169675 lncRNA upstream 43102 13427351 ~ 13427999 (+) True G135138
TU169673 lncRNA upstream 50050 13417405 ~ 13421051 (+) True G135137
TU169667 lncRNA upstream 73465 13372603 ~ 13397636 (+) True G135131
TU169639 lncRNA upstream 172901 13293619 ~ 13298200 (+) True G135117
TU169641 lncRNA upstream 176215 13287666 ~ 13294886 (+) False G135117
TU169884 lncRNA downstream 21973 13530772 ~ 13531293 (+) False G135250
TU169885 lncRNA downstream 21973 13530772 ~ 13531293 (+) True G135250
TU169892 lncRNA downstream 23899 13532698 ~ 13587530 (+) True G135255
TU169893 lncRNA downstream 23899 13532698 ~ 13625360 (+) False G135255
TU169896 lncRNA downstream 28447 13537246 ~ 13541117 (+) True G135257
AMCG00012224 mRNA upstream 147712 13317915 ~ 13323389 (+) True AMCG00012224
AMCG00012223 mRNA upstream 163578 13303056 ~ 13307523 (+) True AMCG00012223
AMCG00012217 mRNA upstream 194134 13269367 ~ 13276967 (+) False AMCG00012217
AMCG00012218 mRNA upstream 268709 13187382 ~ 13202392 (+) True AMCG00012218
AMCG00012212 mRNA upstream 288271 13166600 ~ 13182830 (+) True AMCG00012212
AMCG00012227 mRNA downstream 16885 13525684 ~ 13527970 (+) True AMCG00012227
AMCG00012236 mRNA downstream 32354 13541153 ~ 13543947 (+) True AMCG00012236
AMCG00012229 mRNA downstream 41255 13550054 ~ 13556902 (+) True AMCG00012229
AMCG00012242 mRNA downstream 187291 13696090 ~ 13700551 (+) True AMCG00012242
AMCG00012241 mRNA downstream 232440 13741239 ~ 13743991 (+) True AMCG00012241
TU169557 other upstream 45742 13422435 ~ 13425359 (+) True G135058
TU169632 other upstream 194130 13269196 ~ 13276971 (+) True AMCG00012217
TU169576 other upstream 497048 12968377 ~ 12974053 (+) True G135070
TU169530 other upstream 685041 12785208 ~ 12786060 (+) False G135038
TU169527 other upstream 693944 12770783 ~ 12777157 (+) True G135037
TU169873 other downstream 10622 13519421 ~ 13520494 (+) True G135240
TU169904 other downstream 75471 13584270 ~ 13585916 (+) True G135264
TU169982 other downstream 298414 13807213 ~ 13813756 (+) False AMCG00012245
TU170021 other downstream 341579 13850378 ~ 13854919 (+) True AMCG00012247
TU170041 other downstream 553438 14062237 ~ 14095797 (+) True AMCG00012253

Expression Profile