RNA id: AMCG00012230


Basic Information

Item Value
RNA id AMCG00012230
length 3887
RNA type mRNA
GC content 0.53
exon number 16
gene id AMCG00012230
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13496487 ~ 13506591 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACTGATACAAGTATATAGTCACCATCAACTATATCAAGTCTAATCTTTGACTATCTTTGTTCTTGTGCTCAGTGTTATGCTTTGCCGTACCGGCCTGGGACCATGGAAACTTGGCTACCATCGCCGTCATCTTTGCCGTACAGGACCGGTTGTGCGCAGGCGCAGTCAGACGTTAAAGGGGCTGCCGGGAGCGCCTCCGCTTGACCAGAAGAGTGAGGAGACGAGTGTCGATCAGGCGTGACGCGACTcgcaaaatcacaaaaataaaaacacgaaGCTGTTCCTCAGCACAGCGAGTGATGAGCCTCCAGTTAGCCGACTCCACGGACATGTGCAGTCCTGCTCCTCTGTCCCTGTGGCCGGAGGAAGCGTCTCctgaggaggatgaggaggagggcACAGCTCTCTTGCAGCAAATGGCAGAGGAGGACGAGGAGATAGACTTGTATAATGAAGAGACCTTCGGACTGGATCTGGAGTCtggcggggaggaggaggacCCGACTGACCTCCTGCTGTTCTGTGGTGACCTGGATACCTCGGTGCCCAGCTTGCCTCCACAGCCCCCGCCACAGACTCCCCCTCCGCCCCCCCGGCCCCCTACCATGGCCAGGCCAGCCGTGATACTACAGCGCCAGCCCTCTGCTGGCCTACGGTGGCTCAGGCAGGGGCGTAGGGATGGGGGCCGCAGGGTGGTGTTTGAGGACCCGGCTGTGGTGCGCACTGTGGAGGGACGACCCAGCCTGCAGAGTCTGGACAGTGCCATCGTGGACAGTGGCGTGAGCTCGTCCTGGGAGGATGACGAGACTTCAGAAGCTGCGCTGCGTCTGCTGTCCCCCTACGGCTCCCGGGCCCCTGCCTCCATCCTACAGGACAAAGCCATCGTGAGTGTGATTGACAGGCCAAACCACCCCAGGATCCCACCCACTACGCTGAACTTCCTGTCGCCCATGTCAGGCCGTTTCTCTGCGTACTCTCCTGGGGCCAAGAGGTCCAGGGGCTTCCCGTCTCCCTCCTCTCCCAACATACGCACCCCCCCGCGCCCTTTCAACCCCAAGATGATGCTGCGGTTTGGAGCACTGTCACCCGGCCCAGGCCCCGCTCCTTTCTTCAGCCCCCCAGCCAAACCCCCCCAGAGGTTCAGGATCCCAGGTCACGTGACTCAGCTCCACCCCCAGCACAGGAGGATCCTCAGCCAACGGCAGCAGAGGTCCCAGAGGAGGGCAACGGACTCCCGCTGGGACCCCTACTCCCATATCATGACTCTGAAGGAGAAGGAGTGGGTGATCAGGCTGCAGATGATCCAGCTACAGAGCGAGAACCCGCACCTCGATGACTACTACTACCAGGAGTATTACCAGCGCCTGGAAAACAAGCTGGCGGAGGAGGAGCTGCTGGGAGACCGTGGCAAGAGAGAGCCGCCCAAGCTGACCACCCCTTACGTCACCAAGACCGACTCCTACCAGCCAGTGGTGCACATCGAGGGCTCTCTGGGCCAGGTGGCCGTGTCCACCTGCTTCTCCCCACGCCGTGCCATCGATGCCGTCCATGCGCACACCCACGAGGAGGAGCTGAAGGACACACGACAACAGAGACTGTCCATCCTTCATGACATCGAGAAGATGTACATGGTGAtgctggagctggaggagggGCAGAGGAAGGCGTCCCTGCTGCCCGAGGATGAGAGACTGCGGCTGCGGGAGCAGAGGGAACGCCGAGTCCACCGCATCTACACACAGCTGCGCCAGCCGGGGGCACACGAATTGAGTGAGGAGTTCCTGCCCTACCTGCTGGTGGCCAAGGGCAAGCGTCTGGTGTCCAGGCTCCTCCCCTACCTGTCCCACGACTCCGCGCTGCAGGTCCTGCGAGCCGTCACCACCCACCTGCCCGTGCTGATGGCAAGAGACTCCACGGGGCCCGACGAGGTGAGGGCGCATTCCCGTCCTGTAGGGTGCAGTCGGTCGGTCGGCGCGTTGGTGCGAACTAACCTTCTGTCCCAGTCTCTCCCGGTGCTGTACCCCTCTCTCTGCCAGGTGATCGGAGGGCTGTCCTTCACTCAGCTGATCAGGGTCCTGAAGGAGTTCACCGCTGCGCTGCCCGACTCCAAAGAGACGCGGCTCTACCTGGCCTGCAAGAACAAGTTTGGGATCTCCCTGCTGTACGCCCTGCTGTCTCAGGGCGAGAGGCTGCTGTCTTCAGACACCCCCATGGAGCCTAGTATTGGGGACTTTGAGAGCTGGTGAGGAGCCTGCTGCCAAATACACTTACTGCACTGatgcacatttatataaatagttaTCACTTATCAAGACCAGAGTGTTgcacaatcaataaaaaacaagttaaagCAGTtctaggaaataaaaaggtgcaGTTGAGAAGTACATATAAAATGAACATGCAGTTGATAAAATTCATGCTATAAAAGGAAGCTGTTATATGCATATGGAAAAGCaagtgtataaaaatgtatggttttaaaaatggaGGATCTAATGTTAAAAGGTGGCCTTTACAGCACAAGCACGATATCCCCTAGATTTCAGCCTAGACTTAGGAGTGCCTAAAAAAAGTCCCTGCTCTGACGATCTGAGTGGTCTTGTAATCTGAAAGACTTCGCGAGCGTCTCTGTAATGTTGGAAGGCCCCAAACCATGACGTTTgtgatttaatacaattttaaaataaaaaatctaccTGCAACCAGTGTAGAGAGGCTAGTACTGGGGTAATGTGTGTGCGGACATTTTGGTCCTAGTGCGTAGTCTAGCAGCAGAATGTTGACCAATCTGGATCTGGGCCGGTGTATGATTTAGGCCTGAAAATAAGGCATTGCAGTGGTCGAGATGTGAAGAAATGAAAGCATGCATAATTGCTCCCCTCCTCCAGGACAGACATCGTGTTCCAGGTGGCCCGGCAGCTGTCCCAGTGCTCCCTGGTGgagccgctgctgctgccctccaACCTGCTGTCCCTGTTCTGCCGATACCTGGACAAGCAGACGGTGCACCAGCTGGAGGAGAGTGTCGAGAGATCTACGGCAGGCTGCCCTGCTATTCCCTCCTAATCTGGATGCTTCATCGTGGGGGTGGGACTTATTTATtcaagctttttctttttgggggtGGGTAGGACTCCTATAGCATGTTGGGAAGATGTCTGGCGGTTTTGATAGTGAGTTCACATCTCGGAAGTCTGTGGGCTCTCCAGTCCGTCTGCACACTCCAGCAGTGTTTAGGGGAAACAGACACGGGCGTTAAACTAGACCTCTGGGTGGGGCTGTCTGGCCTCAATGCATTGTGTGCATTGGGGGTGGGGCAGTGATGGAGTTGGGGGTGTACAATGTATTTCCAATTGGACATGTTGTATAGTAGCACCGTGGgtgtttcagtctttttttttatatatatatacatgtataaatatataatagatttattttcttaaattctctatgatttatttaattttattcccttAACAAAAAATGATTTCTTGGGTTCCCTTCGAGGGGACGGCTTCTGTGAACAGACTTGATGAAACTGTAGCTACAGTTTGGTATATTTCTTCTATTggtggattttcttttctctgctgCGACGCTGCAGTATTCCTGTGTCGTTCAGTTCTGGTGTGGCCAGTGTGGGGCCTTTACGGTGCTGCCATAACCATGCATGATCTGTGTACAtctacatttctctttttttttttttttttttgtatctcggAAGTGGTTTCTAAGAGATCgtgcttttcagttttatttaatttacaactcTGTTGCCCAGtgtgacttattttattttctggagaAGTTTAGTTGACATTTGtgcacacattcacaaactGTACAGCAcctgcaaacaaataataaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K24823 PATL2; protein PAT1 homolog 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169686 lncRNA downstream 70489 13422435 ~ 13425998 (-) True G135146
TU169687 lncRNA downstream 70489 13422435 ~ 13425998 (-) False G135146
TU169703 lncRNA downstream 70489 13422435 ~ 13425998 (-) False G135146
TU169837 lncRNA downstream 77683 13417405 ~ 13418804 (-) True G135217
TU169812 lncRNA downstream 167443 13321731 ~ 13329044 (-) True G135202
TU169954 lncRNA upstream 103895 13610486 ~ 13635986 (-) False AMCG00012238
TU169996 lncRNA upstream 245319 13751910 ~ 13818084 (-) True G135333
TU170104 lncRNA upstream 347967 13854558 ~ 13856288 (-) True G135405
TU170116 lncRNA upstream 377211 13883802 ~ 13884899 (-) True G135416
TU170117 lncRNA upstream 378338 13884929 ~ 13886535 (-) True G135417
AMCG00012232 mRNA downstream 9908 13465472 ~ 13486579 (-) True AMCG00012232
AMCG00012226 mRNA downstream 196066 13296419 ~ 13300421 (-) True AMCG00012226
AMCG00012225 mRNA downstream 204618 13281096 ~ 13291869 (-) True AMCG00012225
AMCG00012220 mRNA downstream 229640 13259410 ~ 13266847 (-) True AMCG00012220
AMCG00012222 mRNA downstream 264098 13231622 ~ 13232389 (-) True AMCG00012222
AMCG00012234 mRNA upstream 3624 13510215 ~ 13518859 (-) True AMCG00012234
AMCG00012233 mRNA upstream 13075 13519666 ~ 13524815 (-) True AMCG00012233
AMCG00012235 mRNA upstream 29604 13536195 ~ 13539367 (-) True AMCG00012235
AMCG00012237 mRNA upstream 40493 13547084 ~ 13552454 (-) True AMCG00012237
AMCG00012231 mRNA upstream 55720 13562311 ~ 13568775 (-) True AMCG00012231
TU169712 other downstream 70422 12880293 ~ 13426065 (-) False G135146
TU169801 other downstream 197051 13298444 ~ 13299436 (-) False AMCG00012226
TU169786 other downstream 264143 13231672 ~ 13232344 (-) False AMCG00012222
TU169761 other downstream 395007 13082221 ~ 13101480 (-) False G135172
TU169764 other downstream 412326 13082221 ~ 13084161 (-) False G135172
TU169875 other upstream 14265 13520856 ~ 13521928 (-) False AMCG00012233
TU169886 other upstream 15787 13522378 ~ 13524681 (-) False AMCG00012233
TU169974 other upstream 198255 13704846 ~ 13705612 (-) True G135318
TU170164 other upstream 586651 14093242 ~ 14094688 (-) True AMCG00012261
TU170639 other upstream 1013239 14519830 ~ 14523063 (-) True G135814

Expression Profile