RNA id: AMCG00012231


Basic Information

Item Value
RNA id AMCG00012231
length 798
RNA type mRNA
GC content 0.64
exon number 3
gene id AMCG00012231
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13562311 ~ 13568775 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTTCCTGAACGGGCCTCGGCTGCTGGACTGGGCGAGCTCCCCGCCGCACCTGCAGTTCAACAAATACGTCCTGACCGGGTACCGGCCCATCTCCTCCGTGCAGGACTGCATCAAGAGCCTCTTCTACCTGCACAACGAGCTGGGCAACATCTACACCCACGGTATCCCTTTGCTGTGCTTCGTGGTGCTGCTCCCCCTCAGTATCCCGTGGGCCCAGATCAGTGTGACGTGGCTGGGGGTGGTGCACTTCCTGGCCTGCCTGTCACCCCAGCTGGGTTCGGTGCTGTACCACCTCTTCATGAACCATGAGGGGGGGGCGCCCGTCTACCACACCCTGCTCACGCTTGACATGTGCGGCATCTGCATGATCAACACACTGGGTCAGTCTGCGAGCCACTGTGCCACTCAAACCGTGGCCCTGCTGGCCTACATCCTGCTCTCCAGCTACGCCATCTACTGCGCCGTCACAGCCCGCAGCAACGTGCGCCGCTTGCAGTCCTTCGCCTGGCAGGCCCTGTTccgcttcttcttcttctcgcTGCGCTGGGCGGGGCTGGGCGCCGGCAGCCCCACCTCGCTGCGCCACTTCCTCACCATGGACTCCCTGGCGCTGCTGGGGGGCGTGATCAACATCAGCCGGGTGCCCGAGCGCTTCCGGCCCGGGACCTTCGACTACTGGTGCAACAGCCACCAGATCATGCATGTGCTGGTGGTGGCCTCCATCCTTTATCTGCACTGGGGGGTGCTGGACGACCTGCTGTGGATTAACACCTACCACTGCCCCCCCGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169686 lncRNA downstream 136313 13422435 ~ 13425998 (-) True G135146
TU169687 lncRNA downstream 136313 13422435 ~ 13425998 (-) False G135146
TU169703 lncRNA downstream 136313 13422435 ~ 13425998 (-) False G135146
TU169837 lncRNA downstream 143507 13417405 ~ 13418804 (-) True G135217
TU169812 lncRNA downstream 233267 13321731 ~ 13329044 (-) True G135202
TU169954 lncRNA upstream 41711 13610486 ~ 13635986 (-) False AMCG00012238
TU169996 lncRNA upstream 183135 13751910 ~ 13818084 (-) True G135333
TU170104 lncRNA upstream 285783 13854558 ~ 13856288 (-) True G135405
TU170116 lncRNA upstream 315027 13883802 ~ 13884899 (-) True G135416
TU170117 lncRNA upstream 316154 13884929 ~ 13886535 (-) True G135417
AMCG00012237 mRNA downstream 9857 13547084 ~ 13552454 (-) True AMCG00012237
AMCG00012235 mRNA downstream 22944 13536195 ~ 13539367 (-) True AMCG00012235
AMCG00012233 mRNA downstream 37496 13519666 ~ 13524815 (-) True AMCG00012233
AMCG00012234 mRNA downstream 43452 13510215 ~ 13518859 (-) True AMCG00012234
AMCG00012230 mRNA downstream 55720 13496487 ~ 13506591 (-) True AMCG00012230
AMCG00012239 mRNA upstream 11877 13580652 ~ 13598237 (-) True AMCG00012239
AMCG00012238 mRNA upstream 41751 13610526 ~ 13667607 (-) True AMCG00012238
AMCG00012240 mRNA upstream 104931 13673706 ~ 13679321 (-) True AMCG00012240
AMCG00012250 mRNA upstream 317963 13886738 ~ 13898497 (-) True AMCG00012250
AMCG00012256 mRNA upstream 421103 13989878 ~ 13996084 (-) True AMCG00012256
TU169886 other downstream 37630 13522378 ~ 13524681 (-) False AMCG00012233
TU169875 other downstream 40383 13520856 ~ 13521928 (-) False AMCG00012233
TU169801 other downstream 262875 13298444 ~ 13299436 (-) False AMCG00012226
TU169786 other downstream 329967 13231672 ~ 13232344 (-) False AMCG00012222
TU169765 other downstream 478150 13082221 ~ 13084161 (-) False G135172
TU169974 other upstream 136071 13704846 ~ 13705612 (-) True G135318
TU170164 other upstream 524467 14093242 ~ 14094688 (-) True AMCG00012261
TU170639 other upstream 951055 14519830 ~ 14523063 (-) True G135814
TU170641 other upstream 962698 14531473 ~ 14534272 (-) True AMCG00012281
TU170666 other upstream 1030447 14599222 ~ 14602802 (-) False AMCG00012292

Expression Profile