RNA id: AMCG00012234


Basic Information

Item Value
RNA id AMCG00012234
length 1014
RNA type mRNA
GC content 0.60
exon number 7
gene id AMCG00012234
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13510215 ~ 13518859 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAACGGTAACCCGCAATTCCAGAACGGGACTCtgcgctcgctctctctctcttcccggTTTCATGTACAGTGTGAAACAGCACTGGAAAAGTTGGGAAGGAATAGAATAcgcccttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcactgtgtgtgtctcttaaCGAGCAGATTGCGCCCAGCGAGTTAAAGCAGAATTACAGAAGACAAGCGCCGATCCGGATTGTTCTCTGCTCTATTTGTATCATATTGTTATTCCGAATTGAGAATTCCTCCGATACAATAGTAACAACCAACAGCAGGgagaaaggaggagagagagagagagagaccgttACAATGGACGACTTGGGCGGCCAGTGCTGCTGTCTGACTGCTCCCCTGCGGCCCCCCCTGACCCGGGACCCCCCCTCCAGACCCCTGTACCACGAGACCCCCCCCAGCCACGCCCCCCTCCTCCTGCATACACCCCACAGCAGCGAGCTGGACCACCTGCTACAGGAGCTCAACGCCACGCAGTTCAACatcacagATGAAATCCTGGCCCAGTTCCCCAGCAGTAAGAGGGACGAGGCAGGAGAGAAGCTCAAGGACCGCCGCCGCCTGTCACACAACCTGTGGTCACGTTTCCATGAGCGTGACGGCCAGCAGTACTGTCAGGAGGACTTCCTGGCCCTCTTCGCGTCGCGCTGCCAGGGCTGCTCCCGGCCCATCCTGGAGAACTACATCTCTGCCCTGAATGCGCTGTGGCACCCGGAGTGCTTCGTCTGCaggCACGAGGGGCAGCCGCTATGCGAGGCGCACTACCACCGCAGCCGGGGTTCTCTGTGCCAGGCCTGCCAGCAGCCGATCACGGGCCGCTGCGTCACCGCCATGGGCGCCCGCTACCACCCCCACCACCTGGTCTGCGCCTTCTGCCTGCGGCCACTGAGCAAGGGCTGCTTCAAGGAGCAGGAGGGCAAGCCCTACTGCCACCCCTGCTTCATCAAACTTTTCGGgtag

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169686 lncRNA downstream 84217 13422435 ~ 13425998 (-) True G135146
TU169687 lncRNA downstream 84217 13422435 ~ 13425998 (-) False G135146
TU169703 lncRNA downstream 84217 13422435 ~ 13425998 (-) False G135146
TU169837 lncRNA downstream 91411 13417405 ~ 13418804 (-) True G135217
TU169812 lncRNA downstream 181171 13321731 ~ 13329044 (-) True G135202
TU169954 lncRNA upstream 91627 13610486 ~ 13635986 (-) False AMCG00012238
TU169996 lncRNA upstream 233051 13751910 ~ 13818084 (-) True G135333
TU170104 lncRNA upstream 335699 13854558 ~ 13856288 (-) True G135405
TU170116 lncRNA upstream 364943 13883802 ~ 13884899 (-) True G135416
TU170117 lncRNA upstream 366070 13884929 ~ 13886535 (-) True G135417
AMCG00012230 mRNA downstream 3624 13496487 ~ 13506591 (-) True AMCG00012230
AMCG00012232 mRNA downstream 23636 13465472 ~ 13486579 (-) True AMCG00012232
AMCG00012226 mRNA downstream 209794 13296419 ~ 13300421 (-) True AMCG00012226
AMCG00012225 mRNA downstream 218346 13281096 ~ 13291869 (-) True AMCG00012225
AMCG00012220 mRNA downstream 243368 13259410 ~ 13266847 (-) True AMCG00012220
AMCG00012233 mRNA upstream 807 13519666 ~ 13524815 (-) True AMCG00012233
AMCG00012235 mRNA upstream 17336 13536195 ~ 13539367 (-) True AMCG00012235
AMCG00012237 mRNA upstream 28225 13547084 ~ 13552454 (-) True AMCG00012237
AMCG00012231 mRNA upstream 43452 13562311 ~ 13568775 (-) True AMCG00012231
AMCG00012239 mRNA upstream 61793 13580652 ~ 13598237 (-) True AMCG00012239
TU169712 other downstream 84150 12880293 ~ 13426065 (-) False G135146
TU169801 other downstream 210779 13298444 ~ 13299436 (-) False AMCG00012226
TU169786 other downstream 277871 13231672 ~ 13232344 (-) False AMCG00012222
TU169761 other downstream 408735 13082221 ~ 13101480 (-) False G135172
TU169764 other downstream 426054 13082221 ~ 13084161 (-) False G135172
TU169875 other upstream 1997 13520856 ~ 13521928 (-) False AMCG00012233
TU169886 other upstream 3519 13522378 ~ 13524681 (-) False AMCG00012233
TU169974 other upstream 185987 13704846 ~ 13705612 (-) True G135318
TU170164 other upstream 574383 14093242 ~ 14094688 (-) True AMCG00012261
TU170639 other upstream 1000971 14519830 ~ 14523063 (-) True G135814

Expression Profile