RNA id: AMCG00012235


Basic Information

Item Value
RNA id AMCG00012235
length 560
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00012235
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13536195 ~ 13539367 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGATAAGCCACGCCCTCTCGGCGAAGCCACACCCACATATATAAACCATCATCGTTGTGTTTAAGCCCCGCCCATTTCCGCCATAAGCAGCGACTTGACCAGAAATCCGTCTCTCCGCTCCACCCATAGCTTATGAAGATTAATCTGCATTACATCTTCATATACAGTCGGAAAACCGTATCATATACAAGACGAGCTTTGTGGGAAAGCGGAGGAACAGCTGCTGGGGAGCCTTGAGCCgcgcagtgcattgtgggatcgTGGAGGACTAAGGCGATCGCAACCGACGGAGAGAAATGGATGTGTTCCTTATGATTCGGCGTCACAAGACGACCATCTTCACCGACGCCAAGGAATCCACCACCGTGTATGAGCTGAAGCGCATCGTAGAGGGCATCCTCAAGAGGGTGCCAGAGGAGCAGCGGCTGTTCAAGgaTGACCAGTTGTTGGAGGACAGTAAGACTCTGGGGGACTGTGGATTCACCAACCAGACCGCCCGGCCCCAGGCTCCAGCCACTGTGGGCCTGGCCTTCAGAATCAATGGTCAGTTTGTGTGA

Function

GO: NA

KEGG:

id description
K03873 ELOB, TCEB2; elongin-B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169686 lncRNA downstream 110197 13422435 ~ 13425998 (-) True G135146
TU169687 lncRNA downstream 110197 13422435 ~ 13425998 (-) False G135146
TU169703 lncRNA downstream 110197 13422435 ~ 13425998 (-) False G135146
TU169837 lncRNA downstream 117391 13417405 ~ 13418804 (-) True G135217
TU169812 lncRNA downstream 207151 13321731 ~ 13329044 (-) True G135202
TU169954 lncRNA upstream 71119 13610486 ~ 13635986 (-) False AMCG00012238
TU169996 lncRNA upstream 212543 13751910 ~ 13818084 (-) True G135333
TU170104 lncRNA upstream 315191 13854558 ~ 13856288 (-) True G135405
TU170116 lncRNA upstream 344435 13883802 ~ 13884899 (-) True G135416
TU170117 lncRNA upstream 345562 13884929 ~ 13886535 (-) True G135417
AMCG00012233 mRNA downstream 11380 13519666 ~ 13524815 (-) True AMCG00012233
AMCG00012234 mRNA downstream 17336 13510215 ~ 13518859 (-) True AMCG00012234
AMCG00012230 mRNA downstream 29604 13496487 ~ 13506591 (-) True AMCG00012230
AMCG00012232 mRNA downstream 49616 13465472 ~ 13486579 (-) True AMCG00012232
AMCG00012226 mRNA downstream 235774 13296419 ~ 13300421 (-) True AMCG00012226
AMCG00012237 mRNA upstream 7717 13547084 ~ 13552454 (-) True AMCG00012237
AMCG00012231 mRNA upstream 22944 13562311 ~ 13568775 (-) True AMCG00012231
AMCG00012239 mRNA upstream 41285 13580652 ~ 13598237 (-) True AMCG00012239
AMCG00012238 mRNA upstream 71159 13610526 ~ 13667607 (-) True AMCG00012238
AMCG00012240 mRNA upstream 134339 13673706 ~ 13679321 (-) True AMCG00012240
TU169886 other downstream 11514 13522378 ~ 13524681 (-) False AMCG00012233
TU169875 other downstream 14267 13520856 ~ 13521928 (-) False AMCG00012233
TU169712 other downstream 110130 12880293 ~ 13426065 (-) False G135146
TU169801 other downstream 236759 13298444 ~ 13299436 (-) False AMCG00012226
TU169786 other downstream 303851 13231672 ~ 13232344 (-) False AMCG00012222
TU169974 other upstream 165479 13704846 ~ 13705612 (-) True G135318
TU170164 other upstream 553875 14093242 ~ 14094688 (-) True AMCG00012261
TU170639 other upstream 980463 14519830 ~ 14523063 (-) True G135814
TU170641 other upstream 992106 14531473 ~ 14534272 (-) True AMCG00012281
TU170666 other upstream 1059855 14599222 ~ 14602802 (-) False AMCG00012292

Expression Profile