RNA id: AMCG00012243



Basic Information


Item Value
RNA id AMCG00012243
length 744
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00012243
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13787380 ~ 13788233 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGATTCCCTGAAGACCCACCCAGATATTGTCTCCTACTCCCTGAAGCCTCTGCACTTGCTGGTTAGGGAAAACAACATCGCGCAGGCAAATCTGCAGAGAGCTGTGCGTGAGTACATCTTGAAGAATGCCCTCTCCCGCTCCTGCTCCAACCAGTGCAAAGTCGGGAGTCTCAGCGATTCGACCAACCCCTGTCTGTGCAAGTGCCACGGGCAAACTGGCATTGATGCAGACTGCTGCCCCATCAAACCAGGCCTGGCCAAGCTGGTGGTGACTGTGGAGAGAGCAACAGGGCTGTGGGGTGACTATTTCTCCAAGACCGATGCCTACGTGAAGGTTTTCTACCGCAAGCAAAGGGAAGAGACCCCTGTTATCTGGAACAATGACTTTCCTTATTGGGGCCGGGAGATCAAATTTGACACAGTGGAACTCTCCATGTCCCAGCCAGTCAAGTTCGAGGTGTCGGATCGGGACAACAAGTGGGATGATGACCTCCTGGGGAAGTGCCAGTTTGACCTGATAAAGGGGAAGATAAATAAGAAGTGTGGCCTCAAACATGGCTCCCTCTATCAGTGTGGAGTTCGCGCCCAGTCTGGGGGAACCAGGGGCAGCTCCGTCCAGCCAACTACACCTTCGGCCATTAGGGCCTCAGTCTGGAAGGGGAAGCACGCGCGCCATCGCCACAAAATCACCCTGAGGAAAGATCCTCAGGTCAGCTGCAGCAAGATTGGCCATCAGCATTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169926 lncRNA upstream 113581 13672114 ~ 13673799 (+) True G135282
TU169924 lncRNA upstream 121499 13665634 ~ 13665881 (+) True G135280
TU169893 lncRNA upstream 162020 13532698 ~ 13625360 (+) False G135255
TU169892 lncRNA upstream 199850 13532698 ~ 13587530 (+) True G135255
TU170036 lncRNA downstream 114074 13902307 ~ 13904536 (+) True G135358
TU170037 lncRNA downstream 116483 13904716 ~ 13905291 (+) True G135359
TU170033 lncRNA downstream 117242 13905475 ~ 13906347 (+) True G135355
TU170057 lncRNA downstream 139755 13927988 ~ 13956305 (+) True G135366
TU170034 lncRNA downstream 158083 13946316 ~ 13948827 (+) True G135356
AMCG00012241 mRNA upstream 43389 13741239 ~ 13743991 (+) True AMCG00012241
AMCG00012242 mRNA upstream 86829 13696090 ~ 13700551 (+) True AMCG00012242
AMCG00012229 mRNA upstream 230478 13550054 ~ 13556902 (+) True AMCG00012229
AMCG00012236 mRNA upstream 243433 13541153 ~ 13543947 (+) True AMCG00012236
AMCG00012227 mRNA upstream 259410 13525684 ~ 13527970 (+) True AMCG00012227
AMCG00012245 mRNA downstream 25315 13813548 ~ 13817545 (+) True AMCG00012245
AMCG00012249 mRNA downstream 43348 13831581 ~ 13836820 (+) True AMCG00012249
AMCG00012248 mRNA downstream 50222 13838455 ~ 13841993 (+) True AMCG00012248
AMCG00012247 mRNA downstream 65715 13853948 ~ 13855055 (+) False AMCG00012247
AMCG00012244 mRNA downstream 71817 13860050 ~ 13877142 (+) True AMCG00012244
TU169904 other upstream 201464 13584270 ~ 13585916 (+) True G135264
TU169873 other upstream 266886 13519421 ~ 13520494 (+) True G135240
TU169846 other upstream 278581 13471101 ~ 13508799 (+) False AMCG00012228
TU169982 other downstream 18980 13807213 ~ 13813756 (+) False AMCG00012245
TU170021 other downstream 62145 13850378 ~ 13854919 (+) True AMCG00012247
TU170041 other downstream 274004 14062237 ~ 14095797 (+) True AMCG00012253
TU170232 other downstream 458530 14246763 ~ 14295415 (+) True AMCG00012268
TU170267 other downstream 587400 14375633 ~ 14377651 (+) True G135541

Expression Profile