RNA id: AMCG00012245


Basic Information

Item Value
RNA id AMCG00012245
length 1401
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00012245
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13807213 ~ 13817545 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCTCTCTCTGCCCTCTTCTCCTGCTGCCCTGGGCTCTGCTCTCACTGTACCAGCCTGATGTTGTTCTGGGCTGCCACACCGGGACCCGGCGAAAATGCCAGAGTGCCAGCTTTGTTCCCGGCTACAACCTGGTGGGTGAAGGTTTCCGCCTGAAAGACCAACCTCCCCTGAACACTGAGTtcttcaaaacactgaactcTCTGCCCAGGATATACAACAGATGCACAGCCACTAAGTTCCAACACTTCATAGAAACCTACGGCACCCATTACATCCACAAGGTGAGGCTGGGGGGCCGAGTGCAGAGCATCACAGCCATGCGCACGTGTGAGGCGGCCATGAAGGGGGTGACTGTTCATGACATCAAGAACTGTCTGAACGTTGAGGCCTCAGCCAACATCAAGGGCGTGACCGCCAACGCCATGGCACAGTTCTGCCGAAAGACCAGCAAGAAGCTGCAACGGGGCCAGACCTTCCACAGCACCTTTTCAGATCGTAAGACAGAGATAACAGGGGGTCTCTCAAGTGTCCATGACATCCTGTTCTCACCTGAAGGGCCGGCTGCATACAAGAAGTGGATGGATTCCCTGAGGACCAACCCAGATATTGTCTCCTACGCCCTGAAGCCTCTGCACTTGTTGGTTAGGGGAAACTACATTGTACAGGCAAACCTGCAGAGAGCTGTGCGTGAGTACATCCTGAAGAATGCCCTCTCCCGCTCCTGCCCCAACCAGTGCAAAGTCGGGCGTCGCAATGATCCGTCCAACCCCTGTCTTTGCAAGTGCCACGGGCAAACTGGCATTGACAGTAACTGCTGCCCCAACAAACCAGGCCTGGCCAAACTGATGGTGACTGTGGTGAGAGCAACAGGGCTGTGGGGTGACTACTTCTCCAAGACCGACGCCTATGTAAAGGTGTTCTATGGCAATCAAAGGGAAGAGACGCGAGTTATCTGGAACAATGACTTCCCTTATTGGGGCCAGCAGATCAAGTTTGGCACAGTGGAACTCTCCATGTTCAAGCCAGTCAAGTTCGAGGTGTGGGATCGTGACAACAGGTGGAATGATGACTTACTAGGGAAGTGCCAGTATTTCCCAAAAAGGGGGAAGATGGAGAAGAAGTGTGGCCTTAAACATGGATCCCTGTATGTCTCCCTTAGTGTGGAGTGCGCGCCCAGCCTTGGGGGAGAGTACTGCCAAAGCTATGTCCCGTCAATATTGTCTACAGACCAGGCTGCCCGCTACGTGGGCCGCAACCTGATGTCCATCCCTGAGCCCTTCCTGAGTGCCCTGCAGAACCAGGGGCGGCACTTCCCAGCAAACTACACCTTCGGCAGTTTGGGCCTCAACCTGGAAGGGGAAGTACACGCGCCATCATCATATAATCATACTGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169926 lncRNA upstream 139749 13672114 ~ 13673799 (+) True G135282
TU169924 lncRNA upstream 147667 13665634 ~ 13665881 (+) True G135280
TU169893 lncRNA upstream 188188 13532698 ~ 13625360 (+) False G135255
TU169892 lncRNA upstream 226018 13532698 ~ 13587530 (+) True G135255
TU170036 lncRNA downstream 84762 13902307 ~ 13904536 (+) True G135358
TU170037 lncRNA downstream 87171 13904716 ~ 13905291 (+) True G135359
TU170033 lncRNA downstream 87930 13905475 ~ 13906347 (+) True G135355
TU170057 lncRNA downstream 110443 13927988 ~ 13956305 (+) True G135366
TU170034 lncRNA downstream 128771 13946316 ~ 13948827 (+) True G135356
AMCG00012243 mRNA upstream 25315 13787380 ~ 13788233 (+) True AMCG00012243
AMCG00012241 mRNA upstream 69557 13741239 ~ 13743991 (+) True AMCG00012241
AMCG00012242 mRNA upstream 112997 13696090 ~ 13700551 (+) True AMCG00012242
AMCG00012229 mRNA upstream 256646 13550054 ~ 13556902 (+) True AMCG00012229
AMCG00012236 mRNA upstream 269601 13541153 ~ 13543947 (+) True AMCG00012236
AMCG00012249 mRNA downstream 14036 13831581 ~ 13836820 (+) True AMCG00012249
AMCG00012248 mRNA downstream 20910 13838455 ~ 13841993 (+) True AMCG00012248
AMCG00012247 mRNA downstream 36403 13853948 ~ 13855055 (+) False AMCG00012247
AMCG00012244 mRNA downstream 42505 13860050 ~ 13877142 (+) True AMCG00012244
AMCG00012246 mRNA downstream 64699 13882244 ~ 13885130 (+) True AMCG00012246
TU169904 other upstream 227632 13584270 ~ 13585916 (+) True G135264
TU169873 other upstream 293054 13519421 ~ 13520494 (+) True G135240
TU169846 other upstream 304749 13471101 ~ 13508799 (+) False AMCG00012228
TU170021 other downstream 32833 13850378 ~ 13854919 (+) True AMCG00012247
TU170041 other downstream 244692 14062237 ~ 14095797 (+) True AMCG00012253
TU170232 other downstream 429218 14246763 ~ 14295415 (+) True AMCG00012268
TU170267 other downstream 558088 14375633 ~ 14377651 (+) True G135541
TU170274 other downstream 560127 14377672 ~ 14378695 (+) False G135544

Expression Profile