RNA id: TU169982



Basic Information


Item Value
RNA id TU169982
length 383
RNA type TUCP
GC content 0.54
exon number 2
gene id AMCG00012245
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13807213 ~ 13817545 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCAGGTGTCAGTGCTCTGTGGTTTGCATACAGACCTTTTTAAACAGCGCACTGAGCTGAGAGCTCACACAGTCTGTGGACAAGAGCCTCGGTTCACAGCTAGCTCTGTATCTGGGTGCCCCAGTCTCAAGAGTATCAGGACAAAAGGGCCCCATCATAATTCAGTGTTCCAGTCATGGGCTCTCTCTGCCCTCTTCTCCTGCTGCCCTGGGCTCTGCTCTCACTGTACCAGCCTGATGTTGTTCTGGGCTGCCACACCGGGACCCGGCGAAAATGCCAGAGTGCCAGCTTTGTTCCCGGCTACAACCTGGTGGGTGAAGGGTTTGACATAGTGAGCATGAAGCGGAAGGGCGCCTACGTAATCAACATTGAGACCTGGGNNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169926 lncRNA upstream 133414 13672114 ~ 13673799 (+) True G135282
TU169924 lncRNA upstream 141332 13665634 ~ 13665881 (+) True G135280
TU169893 lncRNA upstream 181853 13532698 ~ 13625360 (+) False G135255
TU169892 lncRNA upstream 219683 13532698 ~ 13587530 (+) True G135255
TU169896 lncRNA upstream 266096 13537246 ~ 13541117 (+) True G135257
TU170036 lncRNA downstream 88551 13902307 ~ 13904536 (+) True G135358
TU170037 lncRNA downstream 90960 13904716 ~ 13905291 (+) True G135359
TU170033 lncRNA downstream 91719 13905475 ~ 13906347 (+) True G135355
TU170057 lncRNA downstream 114232 13927988 ~ 13956305 (+) True G135366
TU170034 lncRNA downstream 132560 13946316 ~ 13948827 (+) True G135356
AMCG00012243 mRNA upstream 18980 13787380 ~ 13788233 (+) True AMCG00012243
AMCG00012241 mRNA upstream 63222 13741239 ~ 13743991 (+) True AMCG00012241
AMCG00012242 mRNA upstream 106662 13696090 ~ 13700551 (+) True AMCG00012242
AMCG00012229 mRNA upstream 250311 13550054 ~ 13556902 (+) True AMCG00012229
AMCG00012236 mRNA upstream 263266 13541153 ~ 13543947 (+) True AMCG00012236
AMCG00012249 mRNA downstream 17825 13831581 ~ 13836820 (+) True AMCG00012249
AMCG00012248 mRNA downstream 24699 13838455 ~ 13841993 (+) True AMCG00012248
AMCG00012247 mRNA downstream 40192 13853948 ~ 13855055 (+) False AMCG00012247
AMCG00012244 mRNA downstream 46294 13860050 ~ 13877142 (+) True AMCG00012244
AMCG00012246 mRNA downstream 68488 13882244 ~ 13885130 (+) True AMCG00012246
TU169904 other upstream 221297 13584270 ~ 13585916 (+) True G135264
TU169873 other upstream 286719 13519421 ~ 13520494 (+) True G135240
TU169846 other upstream 298414 13471101 ~ 13508799 (+) False AMCG00012228
TU169847 other upstream 298414 13471101 ~ 13508799 (+) False AMCG00012228
TU169844 other upstream 298414 13506190 ~ 13508799 (+) True AMCG00012228
TU170021 other downstream 36622 13850378 ~ 13854919 (+) True AMCG00012247
TU170041 other downstream 248481 14062237 ~ 14095797 (+) True AMCG00012253
TU170232 other downstream 433007 14246763 ~ 14295415 (+) True AMCG00012268
TU170267 other downstream 561877 14375633 ~ 14377651 (+) True G135541
TU170274 other downstream 563916 14377672 ~ 14378695 (+) False G135544

Expression Profile