RNA id: AMCG00012249


Basic Information

Item Value
RNA id AMCG00012249
length 492
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00012249
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13831581 ~ 13836820 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCCAACTTGAAGGCATTGCTGAAGTTGAACCCCTGAGCCTGGCGTCCCTGTGCCCATGCATGCGATTGCCAGCCCCAGGTGCGTCTCCTGTGTCCCCTGTCAGCAGTGTAAAGACCCCACCCCCTTTAATGGTTGTGCGCAGCAGTAAGTTCCGGCACGTGTTCGGCCAGCCGGTCAAGGCTGACCAGTGCTACGATGACATGCGCATCTCCCAGATGACCTGGGACAGCACCTTCTGCTCCGTCAACCCCAAATTCCTCGCCATGATCGTGGATGCCAGCGGAGGCGGGGCCTTCATGGTGCTGCCACTCAGCAAGGTAGGACAGGGctggaagagagagggaggagagaggaagagggaagagggaagaggagggaaGGGTGTGGGTAGAGGAGGTGAGGGTGAAAAGAGcgggagaggggaggagaggcaacagggagagggaggagagaaaggCATTGAGAGGGAGGGGGAACATGGAGCATAG

Function

GO:

id name namespace
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0051015 actin filament binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169926 lncRNA upstream 157782 13672114 ~ 13673799 (+) True G135282
TU169924 lncRNA upstream 165700 13665634 ~ 13665881 (+) True G135280
TU169893 lncRNA upstream 206221 13532698 ~ 13625360 (+) False G135255
TU169892 lncRNA upstream 244051 13532698 ~ 13587530 (+) True G135255
TU170036 lncRNA downstream 65487 13902307 ~ 13904536 (+) True G135358
TU170037 lncRNA downstream 67896 13904716 ~ 13905291 (+) True G135359
TU170033 lncRNA downstream 68655 13905475 ~ 13906347 (+) True G135355
TU170057 lncRNA downstream 91168 13927988 ~ 13956305 (+) True G135366
TU170034 lncRNA downstream 109496 13946316 ~ 13948827 (+) True G135356
AMCG00012245 mRNA upstream 14036 13813548 ~ 13817545 (+) True AMCG00012245
AMCG00012243 mRNA upstream 43348 13787380 ~ 13788233 (+) True AMCG00012243
AMCG00012241 mRNA upstream 87590 13741239 ~ 13743991 (+) True AMCG00012241
AMCG00012242 mRNA upstream 131030 13696090 ~ 13700551 (+) True AMCG00012242
AMCG00012229 mRNA upstream 274679 13550054 ~ 13556902 (+) True AMCG00012229
AMCG00012248 mRNA downstream 1635 13838455 ~ 13841993 (+) True AMCG00012248
AMCG00012247 mRNA downstream 17128 13853948 ~ 13855055 (+) False AMCG00012247
AMCG00012244 mRNA downstream 23230 13860050 ~ 13877142 (+) True AMCG00012244
AMCG00012246 mRNA downstream 45424 13882244 ~ 13885130 (+) True AMCG00012246
AMCG00012255 mRNA downstream 131711 13968531 ~ 13977224 (+) True AMCG00012255
TU169982 other upstream 17825 13807213 ~ 13813756 (+) False AMCG00012245
TU169904 other upstream 245665 13584270 ~ 13585916 (+) True G135264
TU169873 other upstream 311087 13519421 ~ 13520494 (+) True G135240
TU169846 other upstream 322782 13471101 ~ 13508799 (+) False AMCG00012228
TU170021 other downstream 13558 13850378 ~ 13854919 (+) True AMCG00012247
TU170041 other downstream 225417 14062237 ~ 14095797 (+) True AMCG00012253
TU170232 other downstream 409943 14246763 ~ 14295415 (+) True AMCG00012268
TU170267 other downstream 538813 14375633 ~ 14377651 (+) True G135541
TU170274 other downstream 540852 14377672 ~ 14378695 (+) False G135544

Expression Profile