RNA id: AMCG00012251


Basic Information

Item Value
RNA id AMCG00012251
length 4598
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00012251
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14048952 ~ 14057554 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttAAAGAATACCAGTTCAACAAACCAGTTCAACAAACCCCCCTATCACATTATATTGTtactgttgcttttgtttttattatataaataagtgttgactcatcattttgtttttattttagcttgtCTGCAACCTGACTTTAATTTGGATCATTTTGAGTTTTGCAGGCTAGTTTGGATCTACATTGGTCAATATGATCAGAGTCATGTTCAATATGCTAaagttttcattattgaataaacacatttgctaACCATATTTTGgctatacatgtttatttatatgaacCTCCTTTGGttggatattttaaaaatgtaaagggatATTTGGCAAATTGATCAGGATCATCGTGGTACGATGCATAATCTATCAATGATTAGAGAACAGGTCAGATCCTGATCAGAATGCATACATGTGTGGGCTGATATGGATTTACACTGAATGCTTCacaaaatgtaagcaatattgataataatcattcgaattattattattaataataataatatttgtatcttagcagatgcccatatccagggcaatttatgaattagtttaataaatacttttatatcGAATCGAGATTGGTACCTGTACATTGCCACGAGcttttttcacagaaataaacatgAGTTTGAACACGTCTCAACTTTTACTTTAATCTTAATGCAGACTTTGGGATGCGGGAGGCTCAATAACAGTGCTATCCTTTAGCTATGCTGTAAACGTGGGAGGATCGATGATCTATAGTACAATTATAAAcaactattattaatatcaaaCATGATTATTTACTGCTATGTGGCAGATCAGCAGCAGCCTGTCCCGCTAGGCTTTCCTTCCTGCAGATTAAGACAGAAGAACAAACTCTTCACACACGTTTACACCAGTGACTTAAACTGGGATTACAAATGCGAATGACAAATCATTTATATAGGCACCAACTAAGTCAGTATTGGAGAAAATCACCAAGGAATCCGCAATATTTCTTTCAATCACACCGCACAAGTTGGCTTCGCTAAGAATCTTGTTGTGACGTCAACTTCGGCGGCTCTCGGCTTTCTCCGTGAGCGGCGAGTCATGGGAAATGTTCCTTCCAGCGCAGTCGCTTTGAGCAGCTGCGCAGCTGTGCAGACCTTGCAGTCGGTGGATGCGGGAGCTGCCGACGTGTTTTCCGGCTGAGTTCACGCAGACGGGTAACCCGGACGGGTCTGTCGCCGAGTCTGCGCAGGCAAAGCATGCGTGACGTCAGCGGGCGGAGTTTGTGCTTCAGTTCAGACCGAGGGAAACGACTGAAAACAGCAGCGGCTTCATGTTGTTACTCAGCTGCTCATTTACACCCGCAGCGCCCTGTGTGAGATCTGGAAGGCGGTGGAAGAGACGGTGTCGGAGTCCCGGGTGGAAATAACccgcagacagagagaaaacgAGGCGCTGAGGCGGAGGCTGCAGGAGCTCATGGTGGCGGGGGAGGCGGCTGTGTGTCACTGGAGCTCCGGAGCGGACGGGCCGCCTGTGCAGAGCCGAGGAGCCGGGAGGAGAGAGTGGAGCTGCGGCCGGACGGAGGGGGAGGCCCGGGCCGCCGGCGCTGGGTCAGACAGGGAGAAGCTGCAGGAGAGGGAGCCTGTGGTGACCAGGCGGCCAGACAACCAGTACAGGgagCCGGTGTTCATGCCACTCAAGGTGGAGATGGGGGACAGCGGGGCCTCCTTCCCGCCCGAGCTCCACGTCAAGGATGAGCCGCTGTACGAGGAGTATGATCATGCAATGACCACGCCCTTTACAATGACCACACCTCACACACTGGCCCCAACCCATGCGTTGCTCGACAGAGAGTTCAATGCTGCAGAGGAGCTGAAGATCAGCGCAGTGTTCTCTTTGGTAGGACACACAGCCGAAGAGATGGAGGGAGCCCCTGCAGCTTCCCCACATTACCCCACCGTGTCCGGGTTGGGCTCCGTCTCTGTGTCCGGACCGGCGCCTGGGGTGGGGGAGGCATTGGGGGTGACTGTCCGTCCCAGGCTTCTAACAGTGCCTGCTGACCCCCAGGTCCCTCCGCCCTCCTCGCTGCCCCTCCGCCCCACTGCCTCAGCCCCCCCAGTTATCAAGCTGTCGTGCTCCGCCTGTAAGGTGCTGCTGCAGAAAGGCCAGATGGCCTACCAGCGCAAGGACTCCACTCAGCTGTTCTGCTCCACGCGGTGTCTGACTGGCAGCACGGTGCCCGCCGTGCCCACCGTGCTGAGGAAGACCTGCCACTTCTGCCTCAAggagatTGGTATCCCCAAGGATGTGATCTCGGCCCCTGTGGACACTGTGGGGACGGTGAAGGATTTCTGCAGCacgccctgtctgtctgcattcAACTATGAGTGCAAGACCACGGCGTCCACTCATGGTGTCACCATCAAGTGCAGCATGTGCCGGAGGACAGCCATAATCCGCCATGAGGTGAACTACCAGGGTGTGGTGCACAAGCTGTGCAGCAACTCCTGCTTCTCCCGCTTCTGTTCTGTCAACAACCTCACTGTGAACTGCTGTGAGAACTGCGGGGGCCACTGCTACAGCTGGGGGAAGCAGTGTCACGTGCTGCAGGTTGAGGGCGCCGCCAAGAAGTTCTCGCCTAAGTTAACAAACCACAACCCTGACCTCCACCGACACTCCAGATCTCTCCAGGATCCAGTCTCTACCAGAACACAGTGTGGGCCCAATCTGGTGTCTgatcacatcaaaacagaggacGATACACTGGAGTCTGTTTACACTGTGGAGCCCAAAACACAGACTCTTACAGGAGAGAAACTCGGTAATCTCAAATCTGACGATACTACAGACAGTGCCTGTGACCTGGggcctgagctccctgtagGGGGACAATGTGACCTGTGGCTTGTAGGTGGACAGTGTGACCCAGAGTCTGCTGTTCAGAAGGTGGGGCTCAGTGAGGAGAGGGACAGTGCGAGGAGGGGGGAGAGCACTGggacacagcacagacagccGTGTCCCAGACCCCCTAGACCCCAttgctcctccagctccccctCCTCACCTGCCCCACTACGGAGTGGAAAACTGCGTCGCCAGCCCCAGGGTGGGAAGAGCCTAACTCACATTGGTGTCTTAAGTAGACATCTGTGCTCTCCCACACAAGAGGGATCATATCAGTGCACCCAGTGTGGTAAGAGATTCAATCAGGCAGAAAACCTTAAAAACCAccagcacacgcacacaggagagaaaacGCATAGCTCCTCCAGTTCCCCCTCCTCACCTACCCCATTACAGAGTGGAAATCTGTGTCATCAGCCCCAGGGTGGGAAGAGCTTAACTTGCATTGGAGTCTTAAGTAGGCATCCTCCCAGTCACACAGAGGAAAGACCATACCAGTGCACCGATTGTGGTAAGAGATTCTTTCAGGCAGAACATCTTAAAGTCCAccagcacactcacacaggagagagaccatgcTGTACACAGTGTGGGAAgaaattcattttgttttccgaGTATATTAGACACCAGCGCATtcatacaggagagagaccgtatCTCTGCATACATTGTGGGAAGAGATTCGCTCAGGCAGGCACCCTTAAAGTCCACCtgcgcactcacacaggagagaaaccatactgcTGCAGCCAGTGTGGGAGGAGATTTGGTGAATTATCAAGCTTTCACAAACACCAGCGggttcacacaggagagagaccgtatCCCTGTACCCAGTGTGGGAAAAGATTTTCTCAACGAGGTTCCCTTAAAATCCACCTGCGCAGtcatacaggagagagaccatactgctgcacccagtgtgggaagagcttcaggGAAGCAGTAGTTTTGAGAAGACATCAGCGTATTCACAGAAAGGAGCAGAATTGAGGTGGTGTATTTGGGATTTATCTGCTCCCGAAAATTATTCATTATGAATTCTTAGAACTGTTTTGAGTTTGAttctttcatgtttaattttcagTAGGAGCGGtttggaaacaaaacatttcacatttgaacATGTAAAGATACTGATTCAGTTTACCTCCGAGTGCTCAGTTTACTCTTttcatgtatatgtttttggCAGACTTGTAGTTTAGTTACCATagtcattgattttgtttggaCTCAGATCTAAAGTGGGCTGTTCCTAAATTAAATTCACCATTACAATGATTACAGCTTAGTTGgtctgtttttctatttctctttgtttactcatgtttattaacattatctacattaaataaaataaacactttaggAGACCATTTCCATTGTCAATTTTCCTAATGATGTGCTTGCACATTATACTATTATGCAATATatatcaaattgtattttagtgcTTGAGAACCCTGAAAGTCTTCTGTTAACCCCTGATTAATATGAAGGTTATTTTTGTCGCTCATTCAGTTTTTGCTTACacattgtattgtacatttatggacatataaaataataatagcactTCAGCAGCTCCATCATTTTTTGAATATATCCCTTTTAAGTGTGGgcaaaaataatctttaatcctcattcaaataagATCAATCAGTCTTAATTGTTGTTGTAGAGCAAGGGCCAGATGTtagaaaaaa

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170057 lncRNA upstream 92647 13927988 ~ 13956305 (+) True G135366
TU170034 lncRNA upstream 100125 13946316 ~ 13948827 (+) True G135356
TU170033 lncRNA upstream 142605 13905475 ~ 13906347 (+) True G135355
TU170037 lncRNA upstream 143661 13904716 ~ 13905291 (+) True G135359
TU170036 lncRNA upstream 144416 13902307 ~ 13904536 (+) True G135358
TU170089 lncRNA downstream 116393 14173947 ~ 14176807 (+) False AMCG00012262
TU170228 lncRNA downstream 169436 14226990 ~ 14232263 (+) True G135506
TU170265 lncRNA downstream 310495 14368049 ~ 14368337 (+) True G135540
TU170270 lncRNA downstream 315486 14373040 ~ 14373945 (+) True G135542
TU170275 lncRNA downstream 320118 14377672 ~ 14378695 (+) True G135544
AMCG00012252 mRNA upstream 59786 13984464 ~ 13989166 (+) True AMCG00012252
AMCG00012254 mRNA upstream 66183 13979470 ~ 13982769 (+) True AMCG00012254
AMCG00012255 mRNA upstream 71728 13968531 ~ 13977224 (+) True AMCG00012255
AMCG00012246 mRNA upstream 163822 13882244 ~ 13885130 (+) True AMCG00012246
AMCG00012244 mRNA upstream 171810 13860050 ~ 13877142 (+) True AMCG00012244
AMCG00012253 mRNA downstream 4892 14062446 ~ 14069189 (+) False AMCG00012253
AMCG00012260 mRNA downstream 42546 14100100 ~ 14117969 (+) True AMCG00012260
AMCG00012262 mRNA downstream 116359 14173913 ~ 14183167 (+) True AMCG00012262
AMCG00012263 mRNA downstream 129173 14186727 ~ 14199995 (+) True AMCG00012263
AMCG00012268 mRNA downstream 235757 14293311 ~ 14296659 (+) False AMCG00012268
TU170021 other upstream 194033 13850378 ~ 13854919 (+) True AMCG00012247
TU169982 other upstream 235196 13807213 ~ 13813756 (+) False AMCG00012245
TU169904 other upstream 463036 13584270 ~ 13585916 (+) True G135264
TU169873 other upstream 528458 13519421 ~ 13520494 (+) True G135240
TU169844 other upstream 540153 13506190 ~ 13508799 (+) True AMCG00012228
TU170041 other downstream 4683 14062237 ~ 14095797 (+) True AMCG00012253
TU170232 other downstream 189209 14246763 ~ 14295415 (+) True AMCG00012268
TU170267 other downstream 318079 14375633 ~ 14377651 (+) True G135541
TU170274 other downstream 320118 14377672 ~ 14378695 (+) False G135544
TU170281 other downstream 330521 14388075 ~ 14389685 (+) False AMCG00012267

Expression Profile