RNA id: AMCG00012252


Basic Information

Item Value
RNA id AMCG00012252
length 2291
RNA type mRNA
GC content 0.49
exon number 8
gene id AMCG00012252
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13984464 ~ 13989166 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGTGATCAAGGAGTGGGGCACTGGGCGCGACACCCTGCGTTGCCTGGCCCTCGCCACCCGCGACTCCCCCCTGAAGAGAGAGGAGATGAACCTCGAGGATTCCACCAAGTTTATTGAGTATGAGACTGACCTGACATTCGTGGGCGTCGTTGGCATGCTGGACCCCCCCCGCAAGGAGGTGACTGGCTCCATCGAGCTGTGCAGACAGGCTGGCATCAGAGTCATCATGATCACtgGCCGTGCCTTCACCGGACGCGAGTTCGACGACCTGCCCCCCGCGGAACAGAGAGAGGCTGTGCGCCACGCCTGCTGCTACGCTCGTGTGGAGCCGTCCCACAAGAGCAAGATCGTCGAGTTCCTGCAGGGTTTCGACGAGATCACTGccatgACTGGTGATGGTGTGAACGACGCCCCCGCCCTGAAGAAGGCCGAGATTGGCATTGCCATGGGCTCTGGCACTGCAGTGGCCAAGTCCGCCTCTGAGATGGTACTGGCTGACGACAACTTCTCCAGTATTGTGGCTGCAGTGGAGGAGGGCCGCGCCATCTACAACAACATGAAGCAATTCATCCGCTATCTCATCTCCTCCAACGTGGGAGAGGTCGTCTGTATCTTCCTGACAGCAGCCCTGGGTCTGCCTGAGGCCCTGATCCCAGTGCAGCTGCTGTGGGTGAATCTGtctcACTTCATGCAATGCACGGAGGAAAACCCCGACTTTGAGGGTGTTGAATGCGAGATCTTCGAGTCGTCCACCCCCATGACCATGGCCCTGTCCGTGCTTGTCACCATTGAGATGTGCAACGCCCTCAACAGTCTGTCAGAGAACCAGTCCCTGGTGAGGATGCCTCCATGGGTGAACTGCTGGCTGCTGGCctccatctgtctgtccatgTCTCTGCACTTCATGATCCTCTACGTTGACCCCCTGCCCaTGATCTTCAAGCTGACTCACCTGAATGTGACTCAGTGGCTAGTGGTATTGAAGATGTCTCTGCCCGTCATTGGGCTTGATGAGGTGCTCAAGTTCGTCGCCCGCAACTACCTAGAAGGTACAGCGTTGGACACGCCTCCACTACATTAGACACAAACCTGATACAATGGACACCCCCACCTATACACTAGACATGTCCCAAATGTACTGAAAACCCTGATACtgtggatgcactgtatatacttTACATACAGTACCCTACTTGTACTCCTACTACCCTGTTACTCACTCCTACTACATTGTTACTCACTGAACCCTCTCCTACTAGTTACTCACTGTACCCACTCCTACACTTACTCACTGTACCCTCTCCTACTAGTTACTCACTGTACCCACTCCTACGACAGTTACTCACTATACCCACTCCCTCTAATTATTTGATGATGCTGCCTCTTacctccctttctttctctcactaTCCTTCCATTCCAGCATAAATGTGTTTCCCTCCATTTCCCGTAACACATGCAAGGTATCCCACAATCctctatgtctgtctgtctgccctgCATGTCCCAAGATGCCCGTGTGTCAGATATGGCCATCAGTCTGTCCAGCCTGCAggctctccctgtctgtctatccACCTTTATTTGCCTCCGTCCCGCTCCCTCCGCCTATACCTCAAAGTGGAGGTGCAAATCAAGTCTGTCTGCCAGTCTATCCGTCAGTCAGTCTGCTAGTATATCTGTGTACCTGTGAGTCTGTCTGCTAGTATGTGAATCTGTCTGTTTGTTGCACATTGTTACAGAAcaagaatgtgtgtgtctgtgtgtgataaACTCTTGCCCTGACCTATAAGAGCAGCTCTGAAGATGTGTGCCTGTGACAGAGGTATAAAACTGAATCAGCCCCCAGCATTGAGGCCTCCTTTTTGTACAGACAAAAAGTCACCTAGGAAAACAtgctacaattaaaaaaaattaaaaatattttaacaagtgGATCACTGTTGCTCACATACTGAGGATAGAAGTGTAGAAGTACTATTTATAAATGAGAGTACTGATAACAAGAACAATCACACAATCCCCATCTCCCTCTAATTCCTCCCCATTCCCTTGCAGAGAAAGATGAGAATCTAGTGAGCAAGAAGTGGAAATGAAGAGGGCAAGACATGAGGAGGGGCGGTTGTGAGAAGCACCCTGGAGAACGAGTGCAGGGGTCACTAGAGTGAAGGAATgagaaaaaaggacaaaaaaaacaaacaaatgaaaacaaaacaaaaaaaacaaaaacaaacaaaaaaaaaaaaaattatttaaaaaaagtatttaattaaattaatgatgaCT

Function

GO:

id name namespace
GO:0009612 response to mechanical stimulus biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0031448 positive regulation of fast-twitch skeletal muscle fiber contraction biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0045988 negative regulation of striated muscle contraction biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0031673 H zone cellular_component
GO:0031674 I band cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170057 lncRNA upstream 28159 13927988 ~ 13956305 (+) True G135366
TU170034 lncRNA upstream 35637 13946316 ~ 13948827 (+) True G135356
TU170033 lncRNA upstream 78117 13905475 ~ 13906347 (+) True G135355
TU170037 lncRNA upstream 79173 13904716 ~ 13905291 (+) True G135359
TU170036 lncRNA upstream 79928 13902307 ~ 13904536 (+) True G135358
TU170089 lncRNA downstream 184781 14173947 ~ 14176807 (+) False AMCG00012262
TU170228 lncRNA downstream 237824 14226990 ~ 14232263 (+) True G135506
TU170265 lncRNA downstream 378883 14368049 ~ 14368337 (+) True G135540
TU170270 lncRNA downstream 383874 14373040 ~ 14373945 (+) True G135542
TU170275 lncRNA downstream 388506 14377672 ~ 14378695 (+) True G135544
AMCG00012254 mRNA upstream 1695 13979470 ~ 13982769 (+) True AMCG00012254
AMCG00012255 mRNA upstream 7240 13968531 ~ 13977224 (+) True AMCG00012255
AMCG00012246 mRNA upstream 99334 13882244 ~ 13885130 (+) True AMCG00012246
AMCG00012244 mRNA upstream 107322 13860050 ~ 13877142 (+) True AMCG00012244
AMCG00012247 mRNA upstream 129409 13853948 ~ 13855055 (+) False AMCG00012247
AMCG00012251 mRNA downstream 59786 14048952 ~ 14057554 (+) True AMCG00012251
AMCG00012253 mRNA downstream 73280 14062446 ~ 14069189 (+) False AMCG00012253
AMCG00012260 mRNA downstream 110934 14100100 ~ 14117969 (+) True AMCG00012260
AMCG00012262 mRNA downstream 184747 14173913 ~ 14183167 (+) True AMCG00012262
AMCG00012263 mRNA downstream 197561 14186727 ~ 14199995 (+) True AMCG00012263
TU170021 other upstream 129545 13850378 ~ 13854919 (+) True AMCG00012247
TU169982 other upstream 170708 13807213 ~ 13813756 (+) False AMCG00012245
TU169904 other upstream 398548 13584270 ~ 13585916 (+) True G135264
TU169873 other upstream 463970 13519421 ~ 13520494 (+) True G135240
TU169844 other upstream 475665 13506190 ~ 13508799 (+) True AMCG00012228
TU170041 other downstream 73071 14062237 ~ 14095797 (+) True AMCG00012253
TU170232 other downstream 257597 14246763 ~ 14295415 (+) True AMCG00012268
TU170267 other downstream 386467 14375633 ~ 14377651 (+) True G135541
TU170274 other downstream 388506 14377672 ~ 14378695 (+) False G135544
TU170281 other downstream 398909 14388075 ~ 14389685 (+) False AMCG00012267

Expression Profile