RNA id: AMCG00012255


Basic Information

Item Value
RNA id AMCG00012255
length 342
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00012255
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13968531 ~ 13977224 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGAGCCCCTGTTGCGTAATGGCTGTGACCTGGGTgtcaaggtcaaaggtcagacaCCCGAAATAGAGCTGCAAATCCAAGAGCTgttgggtgtgtgtgaCAAAACCACGGAGGAGTGCCTGGCGTACTTTGGGGTGAACGAGAACACAGGCCTCTCCCCTGAGCAGGTCAAGAAGAACATGGCAAAGTACGGCCCCAatgGTAAGACCCTGTGGGAACTGGTGGCAGAACAGTTTGAGGATCTCCTGGTCAGGATCCTGCTGCTGGCTGCTTGCATCTCCTTCGTAAGTCTGACCCCCATCCTTGCCTGTCTGCCTCTGTCTGGTCTGTCTGCCTGTTAG

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170057 lncRNA upstream 12226 13927988 ~ 13956305 (+) True G135366
TU170034 lncRNA upstream 19704 13946316 ~ 13948827 (+) True G135356
TU170033 lncRNA upstream 62184 13905475 ~ 13906347 (+) True G135355
TU170037 lncRNA upstream 63240 13904716 ~ 13905291 (+) True G135359
TU170036 lncRNA upstream 63995 13902307 ~ 13904536 (+) True G135358
TU170089 lncRNA downstream 196723 14173947 ~ 14176807 (+) False AMCG00012262
TU170228 lncRNA downstream 249766 14226990 ~ 14232263 (+) True G135506
TU170265 lncRNA downstream 390825 14368049 ~ 14368337 (+) True G135540
TU170270 lncRNA downstream 395816 14373040 ~ 14373945 (+) True G135542
TU170275 lncRNA downstream 400448 14377672 ~ 14378695 (+) True G135544
AMCG00012246 mRNA upstream 83401 13882244 ~ 13885130 (+) True AMCG00012246
AMCG00012244 mRNA upstream 91389 13860050 ~ 13877142 (+) True AMCG00012244
AMCG00012247 mRNA upstream 113476 13853948 ~ 13855055 (+) False AMCG00012247
AMCG00012248 mRNA upstream 126538 13838455 ~ 13841993 (+) True AMCG00012248
AMCG00012249 mRNA upstream 131711 13831581 ~ 13836820 (+) True AMCG00012249
AMCG00012254 mRNA downstream 2246 13979470 ~ 13982769 (+) True AMCG00012254
AMCG00012252 mRNA downstream 7240 13984464 ~ 13989166 (+) True AMCG00012252
AMCG00012251 mRNA downstream 71728 14048952 ~ 14057554 (+) True AMCG00012251
AMCG00012253 mRNA downstream 85222 14062446 ~ 14069189 (+) False AMCG00012253
AMCG00012260 mRNA downstream 122876 14100100 ~ 14117969 (+) True AMCG00012260
TU170021 other upstream 113612 13850378 ~ 13854919 (+) True AMCG00012247
TU169982 other upstream 154775 13807213 ~ 13813756 (+) False AMCG00012245
TU169904 other upstream 382615 13584270 ~ 13585916 (+) True G135264
TU169873 other upstream 448037 13519421 ~ 13520494 (+) True G135240
TU169844 other upstream 459732 13506190 ~ 13508799 (+) True AMCG00012228
TU170041 other downstream 85013 14062237 ~ 14095797 (+) True AMCG00012253
TU170232 other downstream 269539 14246763 ~ 14295415 (+) True AMCG00012268
TU170267 other downstream 398409 14375633 ~ 14377651 (+) True G135541
TU170274 other downstream 400448 14377672 ~ 14378695 (+) False G135544
TU170281 other downstream 410851 14388075 ~ 14389685 (+) False AMCG00012267

Expression Profile